Gene Rcas_3262 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3262 
Symbol 
ID5540760 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp4236790 
End bp4237458 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content60% 
IMG OID640895381 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_001433332 
Protein GI156743203 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.764026 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTACCA TGCCTATCCG TATTCTGCTG GCCGATGATC ATCGCATGTT CCGCCAGGGA 
CTGCGCGAAC TGCTTGAGCG CAAAGGCGGG TTCATCATCG TTGGCGAGGC GTCAACCGGG
CGCGAGGTGC TGGCGCAGGC GGCAGCGCTG CGCCCGGACA TCGTGCTGCT CGATATTCAG
ATGCCGGAGA TCGATGGCGT CGCTGTCGCG CGGCAACTGG CGCAGACGCA CCCGGATGTC
AAGGTCATTA TGCTGACAAT GTATCGCCAG GATCAGCATC TGTTCGAGGC GATCAAAGCC
GGGGCGCGCG CCTATCTGCT GAAGGACGCC GACGCCGACG AATTGATTGA TGTGATCGAA
CGGGTGCATC GCGGCGAAGC GGCGCTTGAT CCGACCGTCA CGCTGCGGGT ATTCGATGAG
TTTCGCCGGT TGAGCATCGA TCAGGACGCC GAACAACTGA CAGAGCGTGA GCGCGATATT
CTCACACTCC TGGCTGAAGG GCATGACAAT CGCACGATTG CGCAACGCCT GTTTCTGTCG
GAGAAGACCG TTGGCAACCG CCTGAGCGAG ATTTTCCAGA AACTCGGCGT CAGCAACCGT
ACCCAGGCTG CGCTGGTGGC GGTACAGCGT GGATTGATTG CACCACCCAA ACCGGACTCG
ACCGAATAG
 
Protein sequence
MSTMPIRILL ADDHRMFRQG LRELLERKGG FIIVGEASTG REVLAQAAAL RPDIVLLDIQ 
MPEIDGVAVA RQLAQTHPDV KVIMLTMYRQ DQHLFEAIKA GARAYLLKDA DADELIDVIE
RVHRGEAALD PTVTLRVFDE FRRLSIDQDA EQLTERERDI LTLLAEGHDN RTIAQRLFLS
EKTVGNRLSE IFQKLGVSNR TQAALVAVQR GLIAPPKPDS TE