| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_0829 |
|---|
| Symbol | |
|---|
| ID | 6204392 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 1012027 |
|---|
| End bp | 1012686 |
|---|
| Gene Length | 660 bp |
|---|
| Protein Length | 219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641690452 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001817717 |
|---|
| Protein GI | 182412651 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0121621 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCTGCTC CTCTGAAAAT AGTTTTGGCG GACGATCATG CGCTGGTCCG TGCGGGCATC
CGCACGCTGC TCGAGAAACT GCCGGGGGTG ACCATCGTCG GCGAGGCGGG CGACGGGCGG
GAAACGGTCA CGCTCGTCCA CACCTTTGCC CCCGATATCG CGATCATGGA TATCACCATG
CCGGGGCTGA ACGGCTTCGA CGCGACGGCA CGCATCGCGC GCGAGCATCC CCGCACGAAG
GTGCTCATCC TGTCGATGCA CACCGCCGAG GATTACGTGC TGCAGGCGTT GCGCGCCGGC
GCCACCGGCT ATTTGCTCAA GGACGCCGCC ACGGCCGAGC TGCAGCTGGC GCTCAATGCC
GTGCGCAAAG GCGAAACCTA CCTGAGCCCG TCGATTTCCA AGAGCGTGCT CGCGCGGTTC
CGGCAGCAGG AACAGGACCC GCGCGCGGAA CCGACCAAGG CACTCACGCC GCGGATGCGC
GAAATCGTCC AGCTGATCGC GGAGGGGCGC AGCACGAAGG AAATCGCGTT TCTGCTCAAC
CTGAGCGTGA AGACGATCGA GACGCACCGG ATGCACCTCA TGGCGCGGCT CGGTTTGCAT
GATGTCGCCG GGGTGGTGCG CTACGCCTTG CGGACGGGAT TGATTTCGGC GGACCATTGA
|
|---|
| Protein sequence | MPAPLKIVLA DDHALVRAGI RTLLEKLPGV TIVGEAGDGR ETVTLVHTFA PDIAIMDITM
PGLNGFDATA RIAREHPRTK VLILSMHTAE DYVLQALRAG ATGYLLKDAA TAELQLALNA
VRKGETYLSP SISKSVLARF RQQEQDPRAE PTKALTPRMR EIVQLIAEGR STKEIAFLLN
LSVKTIETHR MHLMARLGLH DVAGVVRYAL RTGLISADH
|
|---|
| |