| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3747 |
|---|
| Symbol | |
|---|
| ID | 6118096 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 4561772 |
|---|
| End bp | 4562392 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641635310 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001762101 |
|---|
| Protein GI | 170728075 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAATTT TTATTGTGGA CGATCATCCG ATCTTTAGAG AGGGGTTAAT TGCCCGCTTA
TCTATGGATG ATGACTTTGT CATTGTTGGC CAAGCTGCAA ATGGTAAAGA AGCCCTTGAG
AAGATGCCTA ATCTAATGCC CGATATTGTG TTGATGGACA TCAGTATGCC TGAGATGAAT
GGCATGGATG CTGCGGAGAT TTTTAAAGAT AAGTTTCCCG AGATTAAAAT ATTAATCCTG
AGTATGCATG ATGATAAGGA GTATGTGTTG AGCGTACTTA ATCGTGGAGT GAGAGGCTAT
GCCCTTAAAG ATATCAGTGC CGCTGAGATG TTCTATGCCT TACGGGTTAT TCATAATGGT
GGTATCTATT ACAGTCGAGC TATTTCAGAT CTCTTAGTCC AGAGTAGTCA GGAACCGGAT
AAAAATACGG TATTAACCAC CAGAGAGCAG ACTGTGCTTC GTTTGCTGGC TTCTGGATTG
AATAATAAGG AGCTCGCTCG AGAGCTCGAT ATTAGTGTTC GCACCATAGA GACACATAGG
CGAAATATTA AAGACAAGTT AGCCATTAAA ACCAGTGCGG GCCTAGTGCG TTACGCGATT
GATCACGGGC TTGATGGTTA A
|
|---|
| Protein sequence | MRIFIVDDHP IFREGLIARL SMDDDFVIVG QAANGKEALE KMPNLMPDIV LMDISMPEMN
GMDAAEIFKD KFPEIKILIL SMHDDKEYVL SVLNRGVRGY ALKDISAAEM FYALRVIHNG
GIYYSRAISD LLVQSSQEPD KNTVLTTREQ TVLRLLASGL NNKELARELD ISVRTIETHR
RNIKDKLAIK TSAGLVRYAI DHGLDG
|
|---|
| |