More than 300 homologs were found in PanDaTox collection
for query gene Rpal_3423 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_011004  Rpal_3423  two component transcriptional regulator, LuxR family  100 
 
 		 235 aa  471  1e-132  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.324081  n/a   
 
 
-
 
NC_007778  RPB_4449  two component LuxR family transcriptional regulator  75.11 
 
 		 230 aa  341  5e-93  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.683214 
 
 
-
 
NC_007958  RPD_2401  response regulator receiver  75.11 
 
 		 230 aa  338  5.9999999999999996e-92  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0808908 
 
 
-
 
NC_007925  RPC_3790  two component LuxR family transcriptional regulator  74.03 
 
 		 226 aa  334  5.999999999999999e-91  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007958  RPD_3789  response regulator receiver  66.81 
 
 		 228 aa  307  9e-83  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0916709 
 
 
-
 
NC_007778  RPB_4035  two component LuxR family transcriptional regulator  66.52 
 
 		 228 aa  303  2.0000000000000002e-81  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_1676  two component transcriptional regulator, LuxR family  66.38 
 
 		 228 aa  302  4.0000000000000003e-81  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011666  Msil_2019  two component transcriptional regulator, LuxR family  56.02 
 
 		 223 aa  243  1.9999999999999999e-63  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_009485  BBta_3079  two component LuxR family transcriptional regulator  55.56 
 
 		 233 aa  243  3e-63  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010505  Mrad2831_3042  two component LuxR family transcriptional regulator  49.77 
 
 		 222 aa  208  7e-53  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.280021 
 
 
-
 
NC_010725  Mpop_3747  two component transcriptional regulator, LuxR family  50 
 
 		 221 aa  203  2e-51  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_5717  two component LuxR family transcriptional regulator  44.44 
 
 		 220 aa  184  1.0000000000000001e-45  Methylobacterium sp. 4-46  Bacteria  normal  0.873964  hitchhiker  0.00405289 
 
 
-
 
NC_011830  Dhaf_1194  two component transcriptional regulator, LuxR family  40.85 
 
 		 217 aa  176  2e-43  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.272513  n/a   
 
 
-
 
NC_011894  Mnod_0851  two component transcriptional regulator, LuxR family  42.2 
 
 		 232 aa  175  5e-43  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_007958  RPD_2393  response regulator receiver  63.36 
 
 		 172 aa  174  9e-43  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.820012  normal  0.124287 
 
 
-
 
NC_007778  RPB_4442  response regulator receiver domain-containing protein  61.15 
 
 		 172 aa  174  9.999999999999999e-43  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.591595 
 
 
-
 
NC_011894  Mnod_0855  two component transcriptional regulator, LuxR family  41.2 
 
 		 223 aa  169  4e-41  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.082304  n/a   
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  42.72 
 
 		 218 aa  164  6.9999999999999995e-40  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  41.78 
 
 		 218 aa  163  2.0000000000000002e-39  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  41.78 
 
 		 218 aa  163  2.0000000000000002e-39  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  41.31 
 
 		 218 aa  159  3e-38  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011831  Cagg_3668  two component transcriptional regulator, LuxR family  40.09 
 
 		 213 aa  157  2e-37  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  37.16 
 
 		 213 aa  155  5.0000000000000005e-37  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_1298  two component transcriptional regulator, LuxR family  38.46 
 
 		 228 aa  153  2e-36  Conexibacter woesei DSM 14684  Bacteria  normal  0.70055  normal  1 
 
 
-
 
NC_014148  Plim_3764  response regulator receiver  38.43 
 
 		 217 aa  153  2.9999999999999998e-36  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.321181  n/a   
 
 
-
 
NC_011830  Dhaf_1230  two component transcriptional regulator, LuxR family  35.98 
 
 		 215 aa  150  1e-35  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  37.22 
 
 		 228 aa  150  2e-35  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011071  Smal_1526  two component transcriptional regulator, LuxR family  40.65 
 
 		 215 aa  144  1e-33  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.88337  normal  1 
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  37.38 
 
 		 224 aa  144  2e-33  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_011830  Dhaf_1205  two component transcriptional regulator, LuxR family  33.33 
 
 		 212 aa  142  4e-33  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_009483  Gura_2780  two component LuxR family transcriptional regulator  35.71 
 
 		 226 aa  140  1.9999999999999998e-32  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_010725  Mpop_4860  two component transcriptional regulator, LuxR family  38.25 
 
 		 236 aa  140  1.9999999999999998e-32  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.142587 
 
 
-
 
NC_007614  Nmul_A1235  two component LuxR family transcriptional regulator  37.33 
 
 		 211 aa  140  1.9999999999999998e-32  Nitrosospira multiformis ATCC 25196  Bacteria  normal  1  n/a   
 
 
-
 
NC_007947  Mfla_0815  two component LuxR family transcriptional regulator  37.33 
 
 		 213 aa  139  3e-32  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00000180305  normal  1 
 
 
-
 
NC_011757  Mchl_4712  two component transcriptional regulator, LuxR family  37.39 
 
 		 236 aa  139  3.9999999999999997e-32  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.37561  normal  1 
 
 
-
 
NC_008781  Pnap_0790  two component LuxR family transcriptional regulator  36.41 
 
 		 214 aa  139  3.9999999999999997e-32  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.870503  normal  0.997505 
 
 
-
 
NC_010172  Mext_4343  response regulator receiver  37.39 
 
 		 236 aa  139  3.9999999999999997e-32  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009455  DehaBAV1_0945  two component LuxR family transcriptional regulator  36.49 
 
 		 232 aa  139  4.999999999999999e-32  Dehalococcoides sp. BAV1  Bacteria  normal  1  n/a   
 
 
-
 
NC_003295  RSc2312  two-component response regulator transcription regulator protein  36.57 
 
 		 238 aa  139  4.999999999999999e-32  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  0.500036 
 
 
-
 
NC_010718  Nther_0648  two component transcriptional regulator, LuxR family  37.98 
 
 		 215 aa  139  4.999999999999999e-32  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013739  Cwoe_4976  two component transcriptional regulator, LuxR family  36.7 
 
 		 218 aa  137  1e-31  Conexibacter woesei DSM 14684  Bacteria  normal  0.289575  normal  0.034027 
 
 
-
 
NC_013204  Elen_1743  two component transcriptional regulator, LuxR family  35.89 
 
 		 214 aa  137  1e-31  Eggerthella lenta DSM 2243  Bacteria  normal  0.370009  normal  0.039988 
 
 
-
 
NC_007974  Rmet_4516  two component LuxR family transcriptional regulator  39.62 
 
 		 214 aa  137  1e-31  Cupriavidus metallidurans CH34  Bacteria  normal  0.0463384  normal  0.0270495 
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  36.7 
 
 		 216 aa  137  1e-31  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_1684  response regulator receiver protein  38.5 
 
 		 207 aa  137  1e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.966789 
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  36.49 
 
 		 214 aa  137  1e-31  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_013093  Amir_5893  two component transcriptional regulator, LuxR family  37.09 
 
 		 218 aa  137  1e-31  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_011757  Mchl_1985  two component transcriptional regulator, LuxR family  33.33 
 
 		 222 aa  136  2e-31  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014210  Ndas_0346  two component transcriptional regulator, LuxR family  37.38 
 
 		 210 aa  137  2e-31  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0205277  normal  0.823307 
 
 
-
 
NC_007954  Sden_1436  response regulator  34.45 
 
 		 214 aa  136  2e-31  Shewanella denitrificans OS217  Bacteria  normal  0.794512  n/a   
 
 
-
 
NC_008345  Sfri_2649  response regulator  34.93 
 
 		 214 aa  137  2e-31  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_013552  DhcVS_934  DNA-binding response regulator, LuxR family  35.68 
 
 		 232 aa  137  2e-31  Dehalococcoides sp. VS  Bacteria  normal  0.717523  n/a   
 
 
-
 
NC_010172  Mext_1668  response regulator receiver  33.33 
 
 		 222 aa  136  3.0000000000000003e-31  Methylobacterium extorquens PA1  Bacteria  normal  0.679138  normal  1 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  37.96 
 
 		 224 aa  136  3.0000000000000003e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009439  Pmen_2375  two component LuxR family transcriptional regulator  37.38 
 
 		 214 aa  135  5e-31  Pseudomonas mendocina ymp  Bacteria  normal  0.405291  normal  0.0506876 
 
 
-
 
NC_009487  SaurJH9_2415  two component LuxR family transcriptional regulator  35.65 
 
 		 217 aa  135  6.0000000000000005e-31  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  1  n/a   
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  35.16 
 
 		 221 aa  135  6.0000000000000005e-31  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_013235  Namu_0523  two component transcriptional regulator, LuxR family  36.11 
 
 		 230 aa  135  6.0000000000000005e-31  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008391  Bamb_5330  two component LuxR family transcriptional regulator  38.14 
 
 		 215 aa  135  6.0000000000000005e-31  Burkholderia ambifaria AMMD  Bacteria  normal  0.858277  normal  1 
 
 
-
 
NC_009632  SaurJH1_2463  response regulator receiver  35.65 
 
 		 217 aa  135  6.0000000000000005e-31  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013530  Xcel_0606  two component transcriptional regulator, LuxR family  36.99 
 
 		 212 aa  135  7.000000000000001e-31  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_002936  DET1063  LuxR family DNA-binding response regulator  35.21 
 
 		 232 aa  134  9e-31  Dehalococcoides ethenogenes 195  Bacteria  normal  0.815436  n/a   
 
 
-
 
NC_007974  Rmet_4715  Two component LuxR family transcriptional regulator  33.8 
 
 		 264 aa  134  9e-31  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008255  CHU_0105  two component LuxR family transcriptional regulator  35.51 
 
 		 215 aa  134  9.999999999999999e-31  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0303042  normal  0.309888 
 
 
-
 
NC_013501  Rmar_2227  two component transcriptional regulator, LuxR family  34.55 
 
 		 217 aa  133  1.9999999999999998e-30  Rhodothermus marinus DSM 4252  Bacteria  normal  0.632961  n/a   
 
 
-
 
NC_007947  Mfla_1714  two component LuxR family transcriptional regulator  34.72 
 
 		 213 aa  133  1.9999999999999998e-30  Methylobacillus flagellatus KT  Bacteria  normal  0.975164  hitchhiker  0.000785935 
 
 
-
 
NC_008554  Sfum_1664  two component LuxR family transcriptional regulator  34.91 
 
 		 218 aa  134  1.9999999999999998e-30  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.49018  normal  1 
 
 
-
 
NC_013411  GYMC61_2911  two component transcriptional regulator, LuxR family  33.01 
 
 		 209 aa  132  3e-30  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_002976  SERP1981  transcriptional regulatory protein DegU, putative  35.48 
 
 		 218 aa  132  3.9999999999999996e-30  Staphylococcus epidermidis RP62A  Bacteria  normal  1  n/a   
 
 
-
 
NC_007347  Reut_A1216  two component LuxR family transcriptional regulator  38.57 
 
 		 215 aa  132  3.9999999999999996e-30  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_010725  Mpop_0347  two component transcriptional regulator, LuxR family  32.86 
 
 		 222 aa  132  3.9999999999999996e-30  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012791  Vapar_3060  two component transcriptional regulator, LuxR family  39.72 
 
 		 215 aa  132  3.9999999999999996e-30  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  29.77 
 
 		 213 aa  132  6e-30  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_007298  Daro_0834  LuxR response regulator receiver  34.43 
 
 		 221 aa  132  6e-30  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  0.0179337 
 
 
-
 
NC_013501  Rmar_1123  two component transcriptional regulator, LuxR family  32.43 
 
 		 242 aa  132  6.999999999999999e-30  Rhodothermus marinus DSM 4252  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  33.64 
 
 		 228 aa  131  6.999999999999999e-30  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_010577  XfasM23_2089  two component LuxR family transcriptional regulator  36.97 
 
 		 220 aa  131  9e-30  Xylella fastidiosa M23  Bacteria  normal  0.954326  n/a   
 
 
-
 
NC_007952  Bxe_B2471  two component LuxR family transcriptional regulator  37.56 
 
 		 220 aa  131  9e-30  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  0.55611 
 
 
-
 
NC_010513  Xfasm12_2177  response regulator receiver protein  36.97 
 
 		 220 aa  131  9e-30  Xylella fastidiosa M12  Bacteria  normal  0.430622  n/a   
 
 
-
 
NC_009675  Anae109_1385  two component LuxR family transcriptional regulator  33.65 
 
 		 212 aa  130  2.0000000000000002e-29  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007511  Bcep18194_B1652  two component LuxR family transcriptional regulator  37.61 
 
 		 215 aa  130  2.0000000000000002e-29  Burkholderia sp. 383  Bacteria  normal  0.187578  normal  0.308689 
 
 
-
 
NC_011884  Cyan7425_4561  two component transcriptional regulator, LuxR family  35.05 
 
 		 217 aa  130  2.0000000000000002e-29  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014151  Cfla_2683  two component transcriptional regulator, LuxR family  36.45 
 
 		 209 aa  130  2.0000000000000002e-29  Cellulomonas flavigena DSM 20109  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  34.58 
 
 		 217 aa  129  3e-29  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  32.88 
 
 		 224 aa  129  3e-29  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010552  BamMC406_4248  two component LuxR family transcriptional regulator  35.65 
 
 		 215 aa  129  3e-29  Burkholderia ambifaria MC40-6  Bacteria  normal  0.206342  normal  1 
 
 
-
 
NC_010524  Lcho_0242  two component LuxR family transcriptional regulator  38.43 
 
 		 211 aa  129  3e-29  Leptothrix cholodnii SP-6  Bacteria  n/a    decreased coverage  0.000159114 
 
 
-
 
NC_008009  Acid345_4290  two component LuxR family transcriptional regulator  33.65 
 
 		 218 aa  129  3e-29  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012669  Bcav_3541  two component transcriptional regulator, LuxR family  35.05 
 
 		 211 aa  130  3e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.485125  normal  0.513005 
 
 
-
 
NC_008391  Bamb_3774  two component LuxR family transcriptional regulator  35.65 
 
 		 215 aa  129  3e-29  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  0.329832 
 
 
-
 
NC_010717  PXO_01515  transcriptional regulator LuxR/uhpA family  36.41 
 
 		 215 aa  129  3e-29  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.422594  n/a   
 
 
-
 
NC_002939  GSU0254  LuxR family DNA-binding response regulator  36.06 
 
 		 215 aa  129  4.0000000000000003e-29  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_012918  GM21_3105  two component transcriptional regulator, LuxR family  30.41 
 
 		 223 aa  129  4.0000000000000003e-29  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_010571  Oter_3239  two component LuxR family transcriptional regulator  33.02 
 
 		 274 aa  129  5.0000000000000004e-29  Opitutus terrae PB90-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010524  Lcho_1402  two component LuxR family transcriptional regulator  35.41 
 
 		 211 aa  129  5.0000000000000004e-29  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  35.02 
 
 		 209 aa  129  5.0000000000000004e-29  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007951  Bxe_A1850  two component LuxR family transcriptional regulator  37.26 
 
 		 216 aa  129  6e-29  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008543  Bcen2424_3595  two component LuxR family transcriptional regulator  35.81 
 
 		 215 aa  128  6e-29  Burkholderia cenocepacia HI2424  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008543  Bcen2424_4365  two component LuxR family transcriptional regulator  37.61 
 
 		 215 aa  128  6e-29  Burkholderia cenocepacia HI2424  Bacteria  normal  0.902614  normal  1 
 
 
-
 
NC_010515  Bcenmc03_5989  two component LuxR family transcriptional regulator  37.61 
 
 		 215 aa  128  6e-29  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  1 
 
 
-
 
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