| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3060 |
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| Symbol | |
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| ID | 7973780 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3217113 |
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| End bp | 3217760 |
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| Gene Length | 648 bp |
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| Protein Length | 215 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644793644 |
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| Product | two component transcriptional regulator, LuxR family |
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| Protein accession | YP_002944945 |
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| Protein GI | 239816035 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCAGG CGACTCAGCC GATTCGAGTG ATGCTGGTGG ACGACCATGC GCTGGTGCGC
ATGGGCTTTC GCATGCTGCT GGCCGATGCG CAGATCGAGG TGGCGGCCGA GGCCGACACC
GGCGAGCAGG CCTGCCAGGA CTACCCGCAG GTGCGGCCCG ACGTGGTGGT GATGGACCTG
TCGATGCCCG GCATGGGCGG CCTGGAGGCG CTGCGCCGCC TGCTGGCGCA CGACCCCAAG
GCGCGCGTGC TGGCGCTGTC GGCGCACGAG GACACGATCC ATCCGCGCCG CGTGCTGCGC
GCCGGCGCAC TCGGCTACCT GGCCAAGCGC AGTGCGCCCG ATGCGCTGAT TGCCGCGGTG
AAGGCCGTGG CGCGCGGCGA CCGCTACATC GACGCCAACA CCGCGCAGGC GCTGGCCACG
GCGCAGATCG AGGGCGAGGC CAACCCGGCC GACCTGCTCA GCGAGCGCGA GTTCTCGGTC
TTCATCCAGC TCGCGCGCGG CATGACGGTG GCACAGATTG CCAGCACGCT GAACCTTTCG
CTCAGCACGG TGGGCTCGCA CCTGTACCGC GTCAAGCAGA AGCTGGGCGC CACCAACCAG
GCGGAACTCA CCTGGGTGGC GCTGCGCTGG GGGCTGATCC AGGTCTAG
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| Protein sequence | MTQATQPIRV MLVDDHALVR MGFRMLLADA QIEVAAEADT GEQACQDYPQ VRPDVVVMDL
SMPGMGGLEA LRRLLAHDPK ARVLALSAHE DTIHPRRVLR AGALGYLAKR SAPDALIAAV
KAVARGDRYI DANTAQALAT AQIEGEANPA DLLSEREFSV FIQLARGMTV AQIASTLNLS
LSTVGSHLYR VKQKLGATNQ AELTWVALRW GLIQV
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