Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1402 |
Symbol | |
ID | 6160023 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1489656 |
End bp | 1490291 |
Gene Length | 636 bp |
Protein Length | 211 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641664156 |
Product | two component LuxR family transcriptional regulator |
Protein accession | YP_001790435 |
Protein GI | 171058086 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACATGC GGGTCTTCAT CGCCGACGAT CATCCGGTGG TCCGGCAAGG CCTCAAGCAG CTGCTGGGCG CCGAGGCCGA TTTCAGCGTC GCCGGCGAAG CCAGCAGCGG CCACGAGGTG ATCGACCAAT GCGGGCGCTT CGCCTGGGAC GTGGCGGTGC TCGATTACCG GATGCCCGGC AAGGGCGGCA TCGACCTGAT CAAGGAACTG CGCCAGCGCT TCCCGGACCG GCCGGTGCTG GTGCTGAGCG TCTGCCCGGA GGACCAGTAC GCGATGCGTG TGCTGCGCGC CGGTGCGGCC GGCTACCTGA CCAAGGAAAG TGCGCCCGAG GACCTGGTCA ACGCCATCCG CAAGGTGGCG CGTGGTGGGC GTTTCGTCAG CGCCGCACTG GGCGAGCAGC TGGCGCTGTC GCTGTCGACC GGTGGCGACG AGCCGCTGCA TTGCCGCCTG TCGGACCGCG AGTACCAGAT CATGTGGCTG CTCGCCTCGG GCAAGAAGGT CGGCGAGATC GCGCAGCAGC TCTTCCTCAG CCCGAACACC ATCAGCACCT ACCGCAAGCG CATCCTCGAG AAGCTCGATC TGAAGAGCAA TGCCGAGCTG ATGCGCTACG CCATCGGGCA TCAGCTGGTC GATTGA
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Protein sequence | MNMRVFIADD HPVVRQGLKQ LLGAEADFSV AGEASSGHEV IDQCGRFAWD VAVLDYRMPG KGGIDLIKEL RQRFPDRPVL VLSVCPEDQY AMRVLRAGAA GYLTKESAPE DLVNAIRKVA RGGRFVSAAL GEQLALSLST GGDEPLHCRL SDREYQIMWL LASGKKVGEI AQQLFLSPNT ISTYRKRILE KLDLKSNAEL MRYAIGHQLV D
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