| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0242 |
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| Symbol | |
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| ID | 6160524 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 260453 |
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| End bp | 261088 |
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| Gene Length | 636 bp |
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| Protein Length | 211 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641662986 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_001789282 |
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| Protein GI | 171056933 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.000159114 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGATCCGCG TGATGCTGGT CGACGACCAC ACGATCGTGC GCATGGGTTT TCGCATGCTG
CTGCAGTCGT GTGCGGACGA CATCGAGGTG GTGGCCGAAG CGCCCGGCGG CGAGGAGGCG
CTGGCGCAGA TCGACACGGT GCTGCCCGAC GTGCTGGTGC TCGACCTGTC GATGCCCGGC
ATGACCGGCC TGGAGCTGCT GCGCCGCCTG AAGGCGCGCA ACAGCCGCAC GCGCGTACTG
GTGCTGTCGG CGCACGAGGA CACCGCGCAC CCGCGCCGCG TGCTGGCGGC CGGCGCGCTC
GGCTACCTGA GCAAGCGTGG CGCGCCCGAG GCGCTGGTCG AGGCGGTGCG GAGGGTGGCG
GCGGGCCAGC GCTACATCGA CCCCGCGATC GCACAGAAGC TCGCGCTGGC GCAGCTGGGC
GACGAGCCGA GCCCGGTCGA TGCGCTGTCC GAGCGCGAGT TCGAGGTCTT CGTGCAGCTC
GCGCGGGGCG CCGGCGTGGC CGACATCGCG GCGCAGCTCA AGCTGTCGGC CAGCACGGTC
GGCACGCACC TCTACAACGT CAAGCAGAAG CTCGGCGCCA GCAACCAGGC CGAGCTGACG
CTGCTGGCGC TGCGCTGGGG GCTGATCGAG GCATGA
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| Protein sequence | MIRVMLVDDH TIVRMGFRML LQSCADDIEV VAEAPGGEEA LAQIDTVLPD VLVLDLSMPG
MTGLELLRRL KARNSRTRVL VLSAHEDTAH PRRVLAAGAL GYLSKRGAPE ALVEAVRRVA
AGQRYIDPAI AQKLALAQLG DEPSPVDALS EREFEVFVQL ARGAGVADIA AQLKLSASTV
GTHLYNVKQK LGASNQAELT LLALRWGLIE A
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