More than 300 homologs were found in PanDaTox collection
for query gene Plim_3764 on replicon NC_014148
Organism: Planctomyces limnophilus DSM 3776



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014148  Plim_3764  response regulator receiver  100 
 
 
217 aa  434  1e-121  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.321181  n/a   
 
 
-
 
NC_010511  M446_5717  two component LuxR family transcriptional regulator  45.28 
 
 
220 aa  169  2e-41  Methylobacterium sp. 4-46  Bacteria  normal  0.873964  hitchhiker  0.00405289 
 
 
-
 
NC_010725  Mpop_3747  two component transcriptional regulator, LuxR family  42.25 
 
 
221 aa  167  2e-40  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_2019  two component transcriptional regulator, LuxR family  42.13 
 
 
223 aa  165  5e-40  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010505  Mrad2831_3042  two component LuxR family transcriptional regulator  42.72 
 
 
222 aa  165  5.9999999999999996e-40  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.280021 
 
 
-
 
NC_011004  Rpal_1676  two component transcriptional regulator, LuxR family  42.52 
 
 
228 aa  160  2e-38  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4035  two component LuxR family transcriptional regulator  42.52 
 
 
228 aa  159  4e-38  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3789  response regulator receiver  41.59 
 
 
228 aa  156  2e-37  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0916709 
 
 
-
 
NC_007925  RPC_3790  two component LuxR family transcriptional regulator  41.31 
 
 
226 aa  155  4e-37  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1230  two component transcriptional regulator, LuxR family  38.21 
 
 
215 aa  155  5.0000000000000005e-37  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4449  two component LuxR family transcriptional regulator  38.6 
 
 
230 aa  155  6e-37  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.683214 
 
 
-
 
NC_011004  Rpal_3423  two component transcriptional regulator, LuxR family  38.43 
 
 
235 aa  153  2e-36  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.324081  n/a   
 
 
-
 
NC_007958  RPD_2401  response regulator receiver  39.07 
 
 
230 aa  153  2e-36  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0808908 
 
 
-
 
NC_011830  Dhaf_1194  two component transcriptional regulator, LuxR family  40.55 
 
 
217 aa  153  2e-36  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.272513  n/a   
 
 
-
 
NC_007974  Rmet_4516  two component LuxR family transcriptional regulator  42.52 
 
 
214 aa  148  6e-35  Cupriavidus metallidurans CH34  Bacteria  normal  0.0463384  normal  0.0270495 
 
 
-
 
NC_010718  Nther_0648  two component transcriptional regulator, LuxR family  40.57 
 
 
215 aa  144  8.000000000000001e-34  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  37.91 
 
 
218 aa  141  6e-33  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  37.44 
 
 
218 aa  140  9.999999999999999e-33  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  37.91 
 
 
218 aa  140  9.999999999999999e-33  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  37.44 
 
 
218 aa  140  9.999999999999999e-33  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_008781  Pnap_0790  two component LuxR family transcriptional regulator  39.05 
 
 
214 aa  140  9.999999999999999e-33  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.870503  normal  0.997505 
 
 
-
 
NC_010725  Mpop_4860  two component transcriptional regulator, LuxR family  37.67 
 
 
236 aa  140  1.9999999999999998e-32  Methylobacterium populi BJ001  Bacteria  normal  normal  0.142587 
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  37.33 
 
 
229 aa  140  1.9999999999999998e-32  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_3668  two component transcriptional regulator, LuxR family  39.52 
 
 
213 aa  139  3e-32  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4675  two component transcriptional regulator, LuxR family  38.14 
 
 
218 aa  139  3e-32  Ralstonia pickettii 12J  Bacteria  normal  0.760252  normal 
 
 
-
 
NC_012857  Rpic12D_3598  two component transcriptional regulator, LuxR family  38.14 
 
 
218 aa  139  3e-32  Ralstonia pickettii 12D  Bacteria  normal  0.329097  normal  0.731815 
 
 
-
 
NC_011894  Mnod_0855  two component transcriptional regulator, LuxR family  34.86 
 
 
223 aa  139  3.9999999999999997e-32  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.082304  n/a   
 
 
-
 
NC_011146  Gbem_0451  two component transcriptional regulator, LuxR family  37.04 
 
 
216 aa  138  7e-32  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A1850  two component LuxR family transcriptional regulator  39.15 
 
 
216 aa  137  7.999999999999999e-32  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_003296  RSp0980  nitrate/nitrite response regulator transcription regulator protein  36.99 
 
 
222 aa  137  8.999999999999999e-32  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_0467  two component transcriptional regulator, LuxR family  37.5 
 
 
216 aa  137  8.999999999999999e-32  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000507383 
 
 
-
 
NC_010501  PputW619_1620  two component LuxR family transcriptional regulator  39.71 
 
 
206 aa  137  8.999999999999999e-32  Pseudomonas putida W619  Bacteria  normal  normal  0.0222153 
 
 
-
 
NC_009485  BBta_3079  two component LuxR family transcriptional regulator  39.25 
 
 
233 aa  137  1e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  37.09 
 
 
213 aa  137  1e-31  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_007947  Mfla_1714  two component LuxR family transcriptional regulator  35.68 
 
 
213 aa  136  2e-31  Methylobacillus flagellatus KT  Bacteria  normal  0.975164  hitchhiker  0.000785935 
 
 
-
 
NC_013170  Ccur_06630  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  38.32 
 
 
215 aa  135  3.0000000000000003e-31  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.252447  normal  0.303532 
 
 
-
 
NC_013595  Sros_5499  response regulator receiver protein  37.21 
 
 
213 aa  135  4e-31  Streptosporangium roseum DSM 43021  Bacteria  decreased coverage  0.00659712  normal  0.108677 
 
 
-
 
NC_010676  Bphyt_6314  two component transcriptional regulator, LuxR family  38.21 
 
 
216 aa  135  4e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  37.16 
 
 
224 aa  135  5e-31  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_011071  Smal_1526  two component transcriptional regulator, LuxR family  35.51 
 
 
215 aa  135  5e-31  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.88337  normal 
 
 
-
 
NC_011830  Dhaf_1205  two component transcriptional regulator, LuxR family  36.32 
 
 
212 aa  135  5e-31  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4248  two component LuxR family transcriptional regulator  37.38 
 
 
215 aa  135  6.0000000000000005e-31  Burkholderia ambifaria MC40-6  Bacteria  normal  0.206342  normal 
 
 
-
 
NC_008391  Bamb_3774  two component LuxR family transcriptional regulator  37.38 
 
 
215 aa  135  6.0000000000000005e-31  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.329832 
 
 
-
 
NC_007511  Bcep18194_B1652  two component LuxR family transcriptional regulator  37.38 
 
 
215 aa  134  9e-31  Burkholderia sp. 383  Bacteria  normal  0.187578  normal  0.308689 
 
 
-
 
NC_013947  Snas_2469  two component transcriptional regulator, LuxR family  37.5 
 
 
214 aa  134  9.999999999999999e-31  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.126163  normal 
 
 
-
 
NC_011757  Mchl_4712  two component transcriptional regulator, LuxR family  36.74 
 
 
236 aa  134  9.999999999999999e-31  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.37561  normal 
 
 
-
 
NC_010557  BamMC406_6196  two component LuxR family transcriptional regulator  37.56 
 
 
215 aa  134  9.999999999999999e-31  Burkholderia ambifaria MC40-6  Bacteria  normal  0.280791  normal  0.522243 
 
 
-
 
NC_008576  Mmc1_2093  two component LuxR family transcriptional regulator  37.44 
 
 
206 aa  134  9.999999999999999e-31  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000328625  normal  0.180863 
 
 
-
 
NC_010172  Mext_4343  response regulator receiver  36.74 
 
 
236 aa  134  9.999999999999999e-31  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_013552  DhcVS_601  DNA-binding response regulator, LuxR family  36.24 
 
 
224 aa  133  1.9999999999999998e-30  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  36.2 
 
 
224 aa  133  1.9999999999999998e-30  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010515  Bcenmc03_5989  two component LuxR family transcriptional regulator  37.38 
 
 
215 aa  133  1.9999999999999998e-30  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_0851  two component transcriptional regulator, LuxR family  34.39 
 
 
232 aa  134  1.9999999999999998e-30  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4365  two component LuxR family transcriptional regulator  37.38 
 
 
215 aa  133  1.9999999999999998e-30  Burkholderia cenocepacia HI2424  Bacteria  normal  0.902614  normal 
 
 
-
 
NC_002939  GSU0254  LuxR family DNA-binding response regulator  35.02 
 
 
215 aa  132  3e-30  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6235  two component transcriptional regulator, LuxR family  35.68 
 
 
210 aa  132  3e-30  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.612124 
 
 
-
 
NC_008061  Bcen_4002  two component LuxR family transcriptional regulator  37.38 
 
 
215 aa  133  3e-30  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_0745  putative two-component response regulator  39.23 
 
 
210 aa  132  3e-30  Pseudomonas aeruginosa PA7  Bacteria  normal  0.536324  n/a   
 
 
-
 
NC_008463  PA14_07840  putative two-component response regulator  38.76 
 
 
210 aa  132  3e-30  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.0171986 
 
 
-
 
NC_007492  Pfl01_5126  two component LuxR family transcriptional regulator  37.44 
 
 
209 aa  132  3.9999999999999996e-30  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.135043  normal  0.384971 
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  34.6 
 
 
213 aa  132  3.9999999999999996e-30  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  35.85 
 
 
228 aa  132  5e-30  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_010117  COXBURSA331_A1168  LuxR family transcriptional regulator  37.74 
 
 
216 aa  131  6e-30  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_0828  response regulator  37.74 
 
 
216 aa  131  7.999999999999999e-30  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.0183204  n/a   
 
 
-
 
NC_007650  BTH_II1247  LuxR family DNA-binding response regulator  36.62 
 
 
215 aa  131  7.999999999999999e-30  Burkholderia thailandensis E264  Bacteria  normal  0.32702  n/a   
 
 
-
 
NC_007947  Mfla_0815  two component LuxR family transcriptional regulator  34.58 
 
 
213 aa  131  7.999999999999999e-30  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00000180305  normal 
 
 
-
 
NC_013204  Elen_1743  two component transcriptional regulator, LuxR family  36.45 
 
 
214 aa  131  9e-30  Eggerthella lenta DSM 2243  Bacteria  normal  0.370009  normal  0.039988 
 
 
-
 
NC_002936  DET0663  LuxR family DNA-binding response regulator  35.78 
 
 
224 aa  131  1.0000000000000001e-29  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0697  LuxR family DNA-binding response regulator  35.78 
 
 
224 aa  131  1.0000000000000001e-29  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A1634  LuxR family DNA-binding response regulator  36.62 
 
 
215 aa  130  1.0000000000000001e-29  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA1736  DNA-binding response regulator NarL  34.78 
 
 
233 aa  130  1.0000000000000001e-29  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_2630  nitrate/nitrite response regulator protein NarL  34.78 
 
 
233 aa  130  1.0000000000000001e-29  Burkholderia pseudomallei 668  Bacteria  normal  0.14617  n/a   
 
 
-
 
NC_007434  BURPS1710b_2764  DNA-binding response regulator NarL  34.78 
 
 
233 aa  130  1.0000000000000001e-29  Burkholderia pseudomallei 1710b  Bacteria  normal  0.922757  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0127  LuxR family DNA-binding response regulator  36.62 
 
 
215 aa  130  1.0000000000000001e-29  Burkholderia pseudomallei 1710b  Bacteria  normal  0.914848  n/a   
 
 
-
 
NC_009080  BMA10247_1519  DNA-binding response regulator NarL  34.78 
 
 
233 aa  130  1.0000000000000001e-29  Burkholderia mallei NCTC 10247  Bacteria  normal  0.281442  n/a   
 
 
-
 
NC_007651  BTH_I1849  DNA-binding response regulator NarL  34.78 
 
 
233 aa  130  1.0000000000000001e-29  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A3072  DNA-binding response regulator NarL  34.78 
 
 
233 aa  130  1.0000000000000001e-29  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1551  LuxR family DNA-binding response regulator  36.62 
 
 
215 aa  130  1.0000000000000001e-29  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2246  DNA-binding response regulator NarL  34.78 
 
 
233 aa  130  1.0000000000000001e-29  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_010087  Bmul_5903  two component LuxR family transcriptional regulator  37.2 
 
 
215 aa  130  1.0000000000000001e-29  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.68975  normal  0.398777 
 
 
-
 
NC_009076  BURPS1106A_2686  nitrate/nitrite response regulator protein NarL  34.78 
 
 
233 aa  130  1.0000000000000001e-29  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_3638  two component LuxR family transcriptional regulator  36.76 
 
 
205 aa  130  2.0000000000000002e-29  Pseudomonas putida F1  Bacteria  normal  normal  0.489861 
 
 
-
 
NC_002947  PP_2101  LuxR family DNA-binding response regulator  36.76 
 
 
207 aa  130  2.0000000000000002e-29  Pseudomonas putida KT2440  Bacteria  decreased coverage  0.00862279  normal  0.220235 
 
 
-
 
NC_010524  Lcho_0242  two component LuxR family transcriptional regulator  38.97 
 
 
211 aa  130  2.0000000000000002e-29  Leptothrix cholodnii SP-6  Bacteria  n/a    decreased coverage  0.000159114 
 
 
-
 
NC_010086  Bmul_4256  two component LuxR family transcriptional regulator  36.15 
 
 
215 aa  130  2.0000000000000002e-29  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.282152  normal 
 
 
-
 
NC_007511  Bcep18194_B2520  two component LuxR family transcriptional regulator  38.94 
 
 
214 aa  130  2.0000000000000002e-29  Burkholderia sp. 383  Bacteria  normal  0.943169  normal  0.310419 
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  39.45 
 
 
221 aa  130  2.0000000000000002e-29  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_012669  Bcav_0236  two component transcriptional regulator, LuxR family  36.57 
 
 
224 aa  130  2.0000000000000002e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_0625  two component transcriptional regulator, LuxR family  36.11 
 
 
216 aa  130  2.0000000000000002e-29  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.732521  normal 
 
 
-
 
NC_002936  DET1063  LuxR family DNA-binding response regulator  36.7 
 
 
232 aa  129  3e-29  Dehalococcoides ethenogenes 195  Bacteria  normal  0.815436  n/a   
 
 
-
 
NC_009483  Gura_2780  two component LuxR family transcriptional regulator  34.43 
 
 
226 aa  129  3e-29  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_2533  response regulator receiver protein  33.18 
 
 
220 aa  129  3e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.495874 
 
 
-
 
NC_009077  Mjls_0581  two component LuxR family transcriptional regulator  33.8 
 
 
215 aa  129  3e-29  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  35.71 
 
 
216 aa  129  3e-29  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A1228  LuxR family DNA-binding response regulator  35.68 
 
 
215 aa  129  3e-29  Burkholderia pseudomallei 668  Bacteria  normal  0.0904383  n/a   
 
 
-
 
NC_008146  Mmcs_0590  two component LuxR family transcriptional regulator  33.8 
 
 
215 aa  129  3e-29  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  34.58 
 
 
220 aa  129  3e-29  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2450  two component LuxR family transcriptional regulator  35.21 
 
 
214 aa  129  3e-29  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.00539256  n/a   
 
 
-
 
NC_008705  Mkms_0603  two component LuxR family transcriptional regulator  33.8 
 
 
215 aa  129  3e-29  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2114  LuxR response regulator receiver  34.48 
 
 
212 aa  129  4.0000000000000003e-29  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.22828 
 
 
-
 
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