More than 300 homologs were found in PanDaTox collection
for query gene RPB_4449 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007778  RPB_4449  two component LuxR family transcriptional regulator  100 
 
 		 230 aa  461  1e-129  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.683214 
 
 
-
 
NC_007958  RPD_2401  response regulator receiver  93.48 
 
 		 230 aa  425  1e-118  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0808908 
 
 
-
 
NC_007925  RPC_3790  two component LuxR family transcriptional regulator  78.9 
 
 		 226 aa  348  5e-95  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_3423  two component transcriptional regulator, LuxR family  75.11 
 
 		 235 aa  341  5e-93  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.324081  n/a   
 
 
-
 
NC_007778  RPB_4035  two component LuxR family transcriptional regulator  73.78 
 
 		 228 aa  338  5.9999999999999996e-92  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007958  RPD_3789  response regulator receiver  72.89 
 
 		 228 aa  337  8e-92  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0916709 
 
 
-
 
NC_011004  Rpal_1676  two component transcriptional regulator, LuxR family  72 
 
 		 228 aa  332  2e-90  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009485  BBta_3079  two component LuxR family transcriptional regulator  61.57 
 
 		 233 aa  274  6e-73  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011666  Msil_2019  two component transcriptional regulator, LuxR family  57.55 
 
 		 223 aa  255  5e-67  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_010505  Mrad2831_3042  two component LuxR family transcriptional regulator  51.85 
 
 		 222 aa  220  9.999999999999999e-57  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.280021 
 
 
-
 
NC_010725  Mpop_3747  two component transcriptional regulator, LuxR family  50.91 
 
 		 221 aa  214  7e-55  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_5717  two component LuxR family transcriptional regulator  47.44 
 
 		 220 aa  199  3.9999999999999996e-50  Methylobacterium sp. 4-46  Bacteria  normal  0.873964  hitchhiker  0.00405289 
 
 
-
 
NC_007958  RPD_2393  response regulator receiver  57.53 
 
 		 172 aa  194  1e-48  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.820012  normal  0.124287 
 
 
-
 
NC_007778  RPB_4442  response regulator receiver domain-containing protein  72.44 
 
 		 172 aa  193  2e-48  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.591595 
 
 
-
 
NC_011894  Mnod_0855  two component transcriptional regulator, LuxR family  44.39 
 
 		 223 aa  187  8e-47  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.082304  n/a   
 
 
-
 
NC_011830  Dhaf_1194  two component transcriptional regulator, LuxR family  41.67 
 
 		 217 aa  185  5e-46  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.272513  n/a   
 
 
-
 
NC_011894  Mnod_0851  two component transcriptional regulator, LuxR family  40.09 
 
 		 232 aa  174  9e-43  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  38.14 
 
 		 213 aa  166  2.9999999999999998e-40  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  39.91 
 
 		 218 aa  162  5.0000000000000005e-39  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  38.67 
 
 		 228 aa  161  7e-39  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  40.09 
 
 		 218 aa  161  1e-38  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  39.63 
 
 		 218 aa  159  2e-38  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  39.63 
 
 		 218 aa  159  2e-38  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_011830  Dhaf_1230  two component transcriptional regulator, LuxR family  37.67 
 
 		 215 aa  158  7e-38  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_011831  Cagg_3668  two component transcriptional regulator, LuxR family  39.52 
 
 		 213 aa  155  5.0000000000000005e-37  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014148  Plim_3764  response regulator receiver  38.6 
 
 		 217 aa  155  7e-37  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.321181  n/a   
 
 
-
 
NC_010725  Mpop_0347  two component transcriptional regulator, LuxR family  35.94 
 
 		 222 aa  154  9e-37  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011071  Smal_1526  two component transcriptional regulator, LuxR family  38.25 
 
 		 215 aa  154  1e-36  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.88337  normal  1 
 
 
-
 
NC_011757  Mchl_1985  two component transcriptional regulator, LuxR family  35.94 
 
 		 222 aa  153  2e-36  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_1668  response regulator receiver  35.94 
 
 		 222 aa  154  2e-36  Methylobacterium extorquens PA1  Bacteria  normal  0.679138  normal  1 
 
 
-
 
NC_010725  Mpop_4860  two component transcriptional regulator, LuxR family  41.33 
 
 		 236 aa  153  2.9999999999999998e-36  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.142587 
 
 
-
 
NC_002976  SERP1981  transcriptional regulatory protein DegU, putative  38.25 
 
 		 218 aa  150  1e-35  Staphylococcus epidermidis RP62A  Bacteria  normal  1  n/a   
 
 
-
 
NC_011830  Dhaf_1205  two component transcriptional regulator, LuxR family  34.88 
 
 		 212 aa  150  1e-35  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_1298  two component transcriptional regulator, LuxR family  34.39 
 
 		 228 aa  149  3e-35  Conexibacter woesei DSM 14684  Bacteria  normal  0.70055  normal  1 
 
 
-
 
NC_009455  DehaBAV1_0945  two component LuxR family transcriptional regulator  37.62 
 
 		 232 aa  149  3e-35  Dehalococcoides sp. BAV1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010172  Mext_4343  response regulator receiver  38.29 
 
 		 236 aa  149  4e-35  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007614  Nmul_A1235  two component LuxR family transcriptional regulator  39.17 
 
 		 211 aa  149  4e-35  Nitrosospira multiformis ATCC 25196  Bacteria  normal  1  n/a   
 
 
-
 
NC_011757  Mchl_4712  two component transcriptional regulator, LuxR family  38.29 
 
 		 236 aa  149  4e-35  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.37561  normal  1 
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  38.99 
 
 		 228 aa  148  8e-35  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  37.04 
 
 		 224 aa  147  1.0000000000000001e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_002939  GSU0682  LuxR family DNA-binding response regulator  40.28 
 
 		 215 aa  147  2.0000000000000003e-34  Geobacter sulfurreducens PCA  Bacteria  normal  0.874366  n/a   
 
 
-
 
NC_012918  GM21_1103  two component transcriptional regulator, LuxR family  35.85 
 
 		 216 aa  146  2.0000000000000003e-34  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_013552  DhcVS_934  DNA-binding response regulator, LuxR family  36.79 
 
 		 232 aa  146  2.0000000000000003e-34  Dehalococcoides sp. VS  Bacteria  normal  0.717523  n/a   
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  38.14 
 
 		 221 aa  146  3e-34  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_009487  SaurJH9_2415  two component LuxR family transcriptional regulator  36.57 
 
 		 217 aa  145  4.0000000000000006e-34  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  1  n/a   
 
 
-
 
NC_009632  SaurJH1_2463  response regulator receiver  36.57 
 
 		 217 aa  145  4.0000000000000006e-34  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008554  Sfum_1664  two component LuxR family transcriptional regulator  37.5 
 
 		 218 aa  145  6e-34  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.49018  normal  1 
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  38.39 
 
 		 214 aa  145  7.0000000000000006e-34  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_007947  Mfla_0815  two component LuxR family transcriptional regulator  36.11 
 
 		 213 aa  144  1e-33  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00000180305  normal  1 
 
 
-
 
NC_012791  Vapar_3060  two component transcriptional regulator, LuxR family  39.44 
 
 		 215 aa  144  1e-33  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_002936  DET1063  LuxR family DNA-binding response regulator  36.32 
 
 		 232 aa  143  2e-33  Dehalococcoides ethenogenes 195  Bacteria  normal  0.815436  n/a   
 
 
-
 
NC_010571  Oter_0829  two component LuxR family transcriptional regulator  35.51 
 
 		 219 aa  143  2e-33  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.0121621 
 
 
-
 
NC_009483  Gura_2780  two component LuxR family transcriptional regulator  39.34 
 
 		 226 aa  143  2e-33  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013552  DhcVS_601  DNA-binding response regulator, LuxR family  33.49 
 
 		 224 aa  144  2e-33  Dehalococcoides sp. VS  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  37.38 
 
 		 224 aa  143  2e-33  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_008781  Pnap_0790  two component LuxR family transcriptional regulator  36.7 
 
 		 214 aa  143  2e-33  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.870503  normal  0.997505 
 
 
-
 
NC_013204  Elen_1743  two component transcriptional regulator, LuxR family  36.06 
 
 		 214 aa  142  4e-33  Eggerthella lenta DSM 2243  Bacteria  normal  0.370009  normal  0.039988 
 
 
-
 
NC_010682  Rpic_3729  two component transcriptional regulator, LuxR family  35.43 
 
 		 214 aa  142  4e-33  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009439  Pmen_2375  two component LuxR family transcriptional regulator  35.51 
 
 		 214 aa  142  4e-33  Pseudomonas mendocina ymp  Bacteria  normal  0.405291  normal  0.0506876 
 
 
-
 
NC_010577  XfasM23_2089  two component LuxR family transcriptional regulator  37.62 
 
 		 220 aa  142  6e-33  Xylella fastidiosa M23  Bacteria  normal  0.954326  n/a   
 
 
-
 
NC_007974  Rmet_4715  Two component LuxR family transcriptional regulator  34.43 
 
 		 264 aa  142  6e-33  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  33.02 
 
 		 224 aa  142  6e-33  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_002936  DET0663  LuxR family DNA-binding response regulator  33.02 
 
 		 224 aa  141  7e-33  Dehalococcoides ethenogenes 195  Bacteria  normal  1  n/a   
 
 
-
 
NC_002936  DET0697  LuxR family DNA-binding response regulator  33.02 
 
 		 224 aa  141  7e-33  Dehalococcoides ethenogenes 195  Bacteria  normal  1  n/a   
 
 
-
 
NC_010513  Xfasm12_2177  response regulator receiver protein  37.62 
 
 		 220 aa  141  7e-33  Xylella fastidiosa M12  Bacteria  normal  0.430622  n/a   
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  34.86 
 
 		 216 aa  141  7e-33  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007947  Mfla_1714  two component LuxR family transcriptional regulator  34.42 
 
 		 213 aa  141  8e-33  Methylobacillus flagellatus KT  Bacteria  normal  0.975164  hitchhiker  0.000785935 
 
 
-
 
NC_012856  Rpic12D_3406  two component transcriptional regulator, LuxR family  35.87 
 
 		 214 aa  140  9.999999999999999e-33  Ralstonia pickettii 12D  Bacteria  normal  0.588591  normal  1 
 
 
-
 
NC_013235  Namu_0523  two component transcriptional regulator, LuxR family  36.32 
 
 		 230 aa  140  9.999999999999999e-33  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007974  Rmet_4516  two component LuxR family transcriptional regulator  38.16 
 
 		 214 aa  141  9.999999999999999e-33  Cupriavidus metallidurans CH34  Bacteria  normal  0.0463384  normal  0.0270495 
 
 
-
 
NC_008009  Acid345_1691  two component LuxR family transcriptional regulator  36.02 
 
 		 208 aa  140  9.999999999999999e-33  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  0.0637899 
 
 
-
 
NC_010717  PXO_01515  transcriptional regulator LuxR/uhpA family  36.02 
 
 		 215 aa  141  9.999999999999999e-33  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.422594  n/a   
 
 
-
 
NC_008463  PA14_30650  response regulator GacA  34.42 
 
 		 214 aa  140  9.999999999999999e-33  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  hitchhiker  0.00700013 
 
 
-
 
NC_009656  PSPA7_2613  response regulator GacA  34.42 
 
 		 214 aa  140  9.999999999999999e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  0.466832  n/a   
 
 
-
 
NC_013530  Xcel_0606  two component transcriptional regulator, LuxR family  38.21 
 
 		 212 aa  140  1.9999999999999998e-32  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  33.33 
 
 		 224 aa  140  1.9999999999999998e-32  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013501  Rmar_2227  two component transcriptional regulator, LuxR family  35.21 
 
 		 217 aa  139  3e-32  Rhodothermus marinus DSM 4252  Bacteria  normal  0.632961  n/a   
 
 
-
 
NC_008025  Dgeo_0183  two component LuxR family transcriptional regulator  39.15 
 
 		 200 aa  139  3.9999999999999997e-32  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.541303  normal  0.654013 
 
 
-
 
NC_011146  Gbem_0451  two component transcriptional regulator, LuxR family  37.14 
 
 		 216 aa  139  3.9999999999999997e-32  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_007347  Reut_A1216  two component LuxR family transcriptional regulator  35.81 
 
 		 215 aa  139  4.999999999999999e-32  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_012918  GM21_0467  two component transcriptional regulator, LuxR family  37.14 
 
 		 216 aa  138  6e-32  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000507383 
 
 
-
 
NC_007951  Bxe_A1850  two component LuxR family transcriptional regulator  36.89 
 
 		 216 aa  138  6e-32  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010524  Lcho_0242  two component LuxR family transcriptional regulator  39.07 
 
 		 211 aa  138  7e-32  Leptothrix cholodnii SP-6  Bacteria  n/a    decreased coverage  0.000159114 
 
 
-
 
NC_013501  Rmar_1123  two component transcriptional regulator, LuxR family  33.18 
 
 		 242 aa  138  7e-32  Rhodothermus marinus DSM 4252  Bacteria  normal  1  n/a   
 
 
-
 
NC_010718  Nther_0648  two component transcriptional regulator, LuxR family  37.68 
 
 		 215 aa  138  8.999999999999999e-32  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008576  Mmc1_2093  two component LuxR family transcriptional regulator  37.26 
 
 		 206 aa  138  8.999999999999999e-32  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000328625  normal  0.180863 
 
 
-
 
NC_003295  RSc2312  two-component response regulator transcription regulator protein  35.07 
 
 		 238 aa  137  1e-31  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  0.500036 
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  32.56 
 
 		 213 aa  137  1e-31  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009675  Anae109_1385  two component LuxR family transcriptional regulator  35.85 
 
 		 212 aa  137  1e-31  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010676  Bphyt_6314  two component transcriptional regulator, LuxR family  36.41 
 
 		 216 aa  137  1e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002939  GSU1293  LuxR family DNA-binding response regulator  36.49 
 
 		 216 aa  136  2e-31  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_1233  two component transcriptional regulator, LuxR family  35.38 
 
 		 220 aa  137  2e-31  Conexibacter woesei DSM 14684  Bacteria  normal  0.681342  normal  0.792953 
 
 
-
 
NC_009078  BURPS1106A_A1551  LuxR family DNA-binding response regulator  35.75 
 
 		 215 aa  136  2e-31  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_010571  Oter_3239  two component LuxR family transcriptional regulator  31.36 
 
 		 274 aa  136  2e-31  Opitutus terrae PB90-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014210  Ndas_0346  two component transcriptional regulator, LuxR family  37.26 
 
 		 210 aa  136  2e-31  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0205277  normal  0.823307 
 
 
-
 
NC_007435  BURPS1710b_A0127  LuxR family DNA-binding response regulator  35.75 
 
 		 215 aa  136  2e-31  Burkholderia pseudomallei 1710b  Bacteria  normal  0.914848  n/a   
 
 
-
 
NC_009075  BURPS668_A1634  LuxR family DNA-binding response regulator  35.75 
 
 		 215 aa  136  2e-31  Burkholderia pseudomallei 668  Bacteria  normal  1  n/a   
 
 
-
 
NC_007650  BTH_II1247  LuxR family DNA-binding response regulator  35.27 
 
 		 215 aa  136  2e-31  Burkholderia thailandensis E264  Bacteria  normal  0.32702  n/a   
 
 
-
 
NC_008148  Rxyl_0160  two component LuxR family transcriptional regulator  36.97 
 
 		 212 aa  136  2e-31  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  33.94 
 
 		 217 aa  137  2e-31  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
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