More than 300 homologs were found in PanDaTox collection
for query gene Rpal_1676 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_1676  two component transcriptional regulator, LuxR family  100 
 
 
228 aa  461  1e-129  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4035  two component LuxR family transcriptional regulator  92.11 
 
 
228 aa  433  1e-120  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3789  response regulator receiver  89.91 
 
 
228 aa  423  1e-117  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0916709 
 
 
-
 
NC_007925  RPC_3790  two component LuxR family transcriptional regulator  75.57 
 
 
226 aa  344  5e-94  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4449  two component LuxR family transcriptional regulator  72 
 
 
230 aa  332  2e-90  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.683214 
 
 
-
 
NC_007958  RPD_2401  response regulator receiver  74.65 
 
 
230 aa  327  1.0000000000000001e-88  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0808908 
 
 
-
 
NC_011004  Rpal_3423  two component transcriptional regulator, LuxR family  66.38 
 
 
235 aa  302  3.0000000000000004e-81  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.324081  n/a   
 
 
-
 
NC_009485  BBta_3079  two component LuxR family transcriptional regulator  62.72 
 
 
233 aa  288  7e-77  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_2019  two component transcriptional regulator, LuxR family  61.93 
 
 
223 aa  271  8.000000000000001e-72  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010505  Mrad2831_3042  two component LuxR family transcriptional regulator  51.17 
 
 
222 aa  225  5.0000000000000005e-58  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.280021 
 
 
-
 
NC_010725  Mpop_3747  two component transcriptional regulator, LuxR family  50.92 
 
 
221 aa  216  2.9999999999999998e-55  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_5717  two component LuxR family transcriptional regulator  48.85 
 
 
220 aa  205  6e-52  Methylobacterium sp. 4-46  Bacteria  normal  0.873964  hitchhiker  0.00405289 
 
 
-
 
NC_007958  RPD_2393  response regulator receiver  57.78 
 
 
172 aa  202  4e-51  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.820012  normal  0.124287 
 
 
-
 
NC_007778  RPB_4442  response regulator receiver domain-containing protein  70.9 
 
 
172 aa  200  1.9999999999999998e-50  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.591595 
 
 
-
 
NC_011894  Mnod_0855  two component transcriptional regulator, LuxR family  46.98 
 
 
223 aa  196  2.0000000000000003e-49  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.082304  n/a   
 
 
-
 
NC_011830  Dhaf_1194  two component transcriptional regulator, LuxR family  43.52 
 
 
217 aa  189  2e-47  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.272513  n/a   
 
 
-
 
NC_011894  Mnod_0851  two component transcriptional regulator, LuxR family  42.53 
 
 
232 aa  177  1e-43  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  44.24 
 
 
218 aa  171  5.999999999999999e-42  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  42.72 
 
 
218 aa  167  1e-40  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  42.06 
 
 
218 aa  166  4e-40  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  42.06 
 
 
218 aa  166  4e-40  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_4860  two component transcriptional regulator, LuxR family  44.09 
 
 
236 aa  164  8e-40  Methylobacterium populi BJ001  Bacteria  normal  normal  0.142587 
 
 
-
 
NC_011830  Dhaf_1230  two component transcriptional regulator, LuxR family  37.85 
 
 
215 aa  164  9e-40  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  41.86 
 
 
228 aa  164  1.0000000000000001e-39  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_3668  two component transcriptional regulator, LuxR family  42.25 
 
 
213 aa  163  2.0000000000000002e-39  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_4712  two component transcriptional regulator, LuxR family  42.86 
 
 
236 aa  162  4.0000000000000004e-39  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.37561  normal 
 
 
-
 
NC_010172  Mext_4343  response regulator receiver  42.86 
 
 
236 aa  162  4.0000000000000004e-39  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  38.14 
 
 
213 aa  162  6e-39  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_3764  response regulator receiver  42.52 
 
 
217 aa  160  2e-38  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.321181  n/a   
 
 
-
 
NC_009675  Anae109_1385  two component LuxR family transcriptional regulator  44.02 
 
 
212 aa  159  3e-38  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0347  two component transcriptional regulator, LuxR family  40.19 
 
 
222 aa  159  4e-38  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1985  two component transcriptional regulator, LuxR family  40.37 
 
 
222 aa  158  8e-38  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1668  response regulator receiver  39.72 
 
 
222 aa  157  1e-37  Methylobacterium extorquens PA1  Bacteria  normal  0.679138  normal 
 
 
-
 
NC_009483  Gura_2780  two component LuxR family transcriptional regulator  40.28 
 
 
226 aa  156  3e-37  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1205  two component transcriptional regulator, LuxR family  36.74 
 
 
212 aa  155  4e-37  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_601  DNA-binding response regulator, LuxR family  36.41 
 
 
224 aa  154  9e-37  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  35.94 
 
 
224 aa  154  1e-36  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  40.48 
 
 
214 aa  154  1e-36  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_002936  DET0663  LuxR family DNA-binding response regulator  35.94 
 
 
224 aa  153  2e-36  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0697  LuxR family DNA-binding response regulator  35.94 
 
 
224 aa  153  2e-36  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_1664  two component LuxR family transcriptional regulator  38.71 
 
 
218 aa  153  2e-36  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.49018  normal 
 
 
-
 
NC_008009  Acid345_4290  two component LuxR family transcriptional regulator  36.28 
 
 
218 aa  152  5e-36  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  36.02 
 
 
213 aa  149  2e-35  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_5893  two component transcriptional regulator, LuxR family  40.65 
 
 
218 aa  149  3e-35  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  39.53 
 
 
221 aa  147  1.0000000000000001e-34  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_010718  Nther_0648  two component transcriptional regulator, LuxR family  39.25 
 
 
215 aa  147  1.0000000000000001e-34  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_1233  two component transcriptional regulator, LuxR family  39.17 
 
 
220 aa  147  1.0000000000000001e-34  Conexibacter woesei DSM 14684  Bacteria  normal  0.681342  normal  0.792953 
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  40.28 
 
 
222 aa  147  2.0000000000000003e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_1298  two component transcriptional regulator, LuxR family  36.89 
 
 
228 aa  146  3e-34  Conexibacter woesei DSM 14684  Bacteria  normal  0.70055  normal 
 
 
-
 
NC_013510  Tcur_0154  two component transcriptional regulator, LuxR family  38.46 
 
 
244 aa  146  3e-34  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_0523  two component transcriptional regulator, LuxR family  38.25 
 
 
230 aa  145  4.0000000000000006e-34  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_0829  two component LuxR family transcriptional regulator  36.36 
 
 
219 aa  144  1e-33  Opitutus terrae PB90-1  Bacteria  normal  normal  0.0121621 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  38.21 
 
 
224 aa  144  1e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009972  Haur_1600  two component LuxR family transcriptional regulator  39.15 
 
 
207 aa  144  1e-33  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1103  two component transcriptional regulator, LuxR family  36.15 
 
 
216 aa  144  1e-33  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  38.6 
 
 
228 aa  143  2e-33  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_007404  Tbd_1290  two component LuxR family transcriptional regulator  38.21 
 
 
209 aa  144  2e-33  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.542915  normal 
 
 
-
 
NC_013204  Elen_1743  two component transcriptional regulator, LuxR family  37.5 
 
 
214 aa  143  2e-33  Eggerthella lenta DSM 2243  Bacteria  normal  0.370009  normal  0.039988 
 
 
-
 
NC_014212  Mesil_1051  two component transcriptional regulator, LuxR family  40.09 
 
 
211 aa  142  3e-33  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0337978 
 
 
-
 
NC_007974  Rmet_4516  two component LuxR family transcriptional regulator  40.55 
 
 
214 aa  142  3e-33  Cupriavidus metallidurans CH34  Bacteria  normal  0.0463384  normal  0.0270495 
 
 
-
 
NC_002939  GSU0682  LuxR family DNA-binding response regulator  38.39 
 
 
215 aa  142  4e-33  Geobacter sulfurreducens PCA  Bacteria  normal  0.874366  n/a   
 
 
-
 
NC_013739  Cwoe_0262  two component transcriptional regulator, LuxR family  38.74 
 
 
225 aa  142  4e-33  Conexibacter woesei DSM 14684  Bacteria  normal  0.0721339  normal  0.623073 
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  34.72 
 
 
216 aa  142  4e-33  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_2613  response regulator GacA  36.15 
 
 
214 aa  142  5e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  0.466832  n/a   
 
 
-
 
NC_008463  PA14_30650  response regulator GacA  36.15 
 
 
214 aa  142  5e-33  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00700013 
 
 
-
 
NC_008576  Mmc1_2093  two component LuxR family transcriptional regulator  38.68 
 
 
206 aa  142  5e-33  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000328625  normal  0.180863 
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  37.33 
 
 
224 aa  141  7e-33  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_013170  Ccur_06630  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  40.57 
 
 
215 aa  141  7e-33  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.252447  normal  0.303532 
 
 
-
 
NC_013530  Xcel_0606  two component transcriptional regulator, LuxR family  39.62 
 
 
212 aa  141  7e-33  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP1981  transcriptional regulatory protein DegU, putative  36.87 
 
 
218 aa  140  9.999999999999999e-33  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1526  two component transcriptional regulator, LuxR family  38.6 
 
 
215 aa  141  9.999999999999999e-33  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.88337  normal 
 
 
-
 
NC_008148  Rxyl_0160  two component LuxR family transcriptional regulator  39.34 
 
 
212 aa  140  9.999999999999999e-33  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  35.32 
 
 
226 aa  140  9.999999999999999e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009727  CBUD_0828  response regulator  38.5 
 
 
216 aa  140  9.999999999999999e-33  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.0183204  n/a   
 
 
-
 
NC_009439  Pmen_2375  two component LuxR family transcriptional regulator  36.32 
 
 
214 aa  140  1.9999999999999998e-32  Pseudomonas mendocina ymp  Bacteria  normal  0.405291  normal  0.0506876 
 
 
-
 
NC_008009  Acid345_1691  two component LuxR family transcriptional regulator  35.05 
 
 
208 aa  140  1.9999999999999998e-32  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0637899 
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  33.48 
 
 
217 aa  140  1.9999999999999998e-32  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  36.28 
 
 
219 aa  140  1.9999999999999998e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_009455  DehaBAV1_0945  two component LuxR family transcriptional regulator  36.67 
 
 
232 aa  140  1.9999999999999998e-32  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3747  two component LuxR family transcriptional regulator  33.65 
 
 
206 aa  139  3e-32  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009487  SaurJH9_2415  two component LuxR family transcriptional regulator  36.57 
 
 
217 aa  139  3e-32  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_2463  response regulator receiver  36.57 
 
 
217 aa  139  3e-32  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2911  two component transcriptional regulator, LuxR family  36.84 
 
 
209 aa  139  3e-32  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  37.1 
 
 
226 aa  139  3.9999999999999997e-32  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_013595  Sros_1684  response regulator receiver protein  39.25 
 
 
207 aa  139  3.9999999999999997e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.966789 
 
 
-
 
NC_007947  Mfla_0815  two component LuxR family transcriptional regulator  36.79 
 
 
213 aa  139  3.9999999999999997e-32  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00000180305  normal 
 
 
-
 
NC_010117  COXBURSA331_A1168  LuxR family transcriptional regulator  38.03 
 
 
216 aa  139  3.9999999999999997e-32  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A1850  two component LuxR family transcriptional regulator  37.56 
 
 
216 aa  139  4.999999999999999e-32  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_2227  two component transcriptional regulator, LuxR family  33.8 
 
 
217 aa  139  4.999999999999999e-32  Rhodothermus marinus DSM 4252  Bacteria  normal  0.632961  n/a   
 
 
-
 
NC_008025  Dgeo_0183  two component LuxR family transcriptional regulator  38.68 
 
 
200 aa  139  4.999999999999999e-32  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.541303  normal  0.654013 
 
 
-
 
NC_008781  Pnap_0790  two component LuxR family transcriptional regulator  36.11 
 
 
214 aa  139  4.999999999999999e-32  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.870503  normal  0.997505 
 
 
-
 
NC_008345  Sfri_2649  response regulator  33.49 
 
 
214 aa  138  6e-32  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1700  two component LuxR family transcriptional regulator  36.79 
 
 
213 aa  138  7e-32  Opitutus terrae PB90-1  Bacteria  normal  normal  0.226192 
 
 
-
 
NC_013205  Aaci_0385  two component transcriptional regulator, LuxR family  37.21 
 
 
224 aa  138  7e-32  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3105  two component transcriptional regulator, LuxR family  34.74 
 
 
223 aa  138  7.999999999999999e-32  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010571  Oter_1239  two component LuxR family transcriptional regulator  37.7 
 
 
196 aa  138  7.999999999999999e-32  Opitutus terrae PB90-1  Bacteria  normal  0.0482404  normal  0.916816 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  36.53 
 
 
226 aa  138  7.999999999999999e-32  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_3359  two component transcriptional regulator, LuxR family  36.28 
 
 
219 aa  137  8.999999999999999e-32  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0172663  normal 
 
 
-
 
NC_013739  Cwoe_4976  two component transcriptional regulator, LuxR family  40 
 
 
218 aa  138  8.999999999999999e-32  Conexibacter woesei DSM 14684  Bacteria  normal  0.289575  normal  0.034027 
 
 
-
 
NC_011146  Gbem_0451  two component transcriptional regulator, LuxR family  37.38 
 
 
216 aa  138  8.999999999999999e-32  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
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