Gene Phep_1616 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_1616 
Symbol 
ID8252718 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp1917054 
End bp1917686 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content42% 
IMG OID644935270 
Productresponse regulator receiver 
Protein accessionYP_003091891 
Protein GI255531519 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.869432 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGAATC AGGCAGAAGC AAGAGTAGTT ATCATAGAAG ATGATCAAAC CATCAGAGAA 
GGCTATACCT ATCTGATCAA CAATACCTCC CCTTATCAGG TAGTCAATAC CTACCCCTCC
TTTGATGCCG CAAGGCAAAA GATCGGCAGG GATAACCCTG ATGTGATTAT CCTGGATATA
CAAATGCCAG GCACCAATGG CATAGATGCG CTTCCGCTGC TAAAAAAAAC CTTGCCGGAT
GTGTATATCA TTATGTTAAC TGTACATGAA ACAGAAAAAA TCATTCTGGA GGCCCTGGCC
AATGGTGCAT CAGGTTACTT TACAAAAAAC ACCCCTTCTT CAAAGATTAT TGAAGCCATT
AAGGATGTTT TACAGGGCGG CGGCCCTATG AGCCCCAATG TTGCCAAAAA AGTCATCACT
TCCCTGCAAA AAAACCCCGA TTCTCCACTC ACCAAAAGAG AAACCCAGAT ATTGAGTCTG
ATGAGCAGGG GCAAAGACAG GTCTCAGATT GCAAATGAAT TGTTTATAGA GATTGAGACC
GTAAAAACAC ACATCAAGAA CATCTACCTT AAACTCGATG TGAACTCAAA AGCAGATGCC
ATTAAAGTTG CTAAAAATAA CCGGCTGGTC TGA
 
Protein sequence
MQNQAEARVV IIEDDQTIRE GYTYLINNTS PYQVVNTYPS FDAARQKIGR DNPDVIILDI 
QMPGTNGIDA LPLLKKTLPD VYIIMLTVHE TEKIILEALA NGASGYFTKN TPSSKIIEAI
KDVLQGGGPM SPNVAKKVIT SLQKNPDSPL TKRETQILSL MSRGKDRSQI ANELFIEIET
VKTHIKNIYL KLDVNSKADA IKVAKNNRLV