More than 300 homologs were found in PanDaTox collection
for query gene Cpin_2387 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013132  Cpin_2387  two component transcriptional regulator, LuxR family  100 
 
 		 207 aa  418  1e-116  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.132486  normal  0.384012 
 
 
-
 
NC_013037  Dfer_1698  two component transcriptional regulator, LuxR family  59.31 
 
 		 207 aa  254  6e-67  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.126193 
 
 
-
 
NC_013132  Cpin_4551  two component transcriptional regulator, LuxR family  50.48 
 
 		 208 aa  228  7e-59  Chitinophaga pinensis DSM 2588  Bacteria  decreased coverage  0.000124934  normal  0.0275678 
 
 
-
 
NC_013132  Cpin_2137  two component transcriptional regulator, LuxR family  44.12 
 
 		 211 aa  179  2.9999999999999997e-44  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0335187  normal  1 
 
 
-
 
NC_013037  Dfer_4502  two component transcriptional regulator, LuxR family  41.75 
 
 		 205 aa  173  9.999999999999999e-43  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.438194 
 
 
-
 
NC_013061  Phep_2962  response regulator receiver  44.44 
 
 		 206 aa  170  2e-41  Pedobacter heparinus DSM 2366  Bacteria  normal  0.117851  normal  1 
 
 
-
 
NC_013132  Cpin_4278  two component transcriptional regulator, LuxR family  36.41 
 
 		 213 aa  166  2.9999999999999998e-40  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  0.0894003 
 
 
-
 
NC_013132  Cpin_1440  two component transcriptional regulator, LuxR family  38.16 
 
 		 208 aa  152  2.9999999999999998e-36  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008044  TM1040_0876  two component LuxR family transcriptional regulator  38.83 
 
 		 233 aa  151  5.9999999999999996e-36  Ruegeria sp. TM1040  Bacteria  normal  0.481499  normal  0.345787 
 
 
-
 
NC_003910  CPS_1260  putative nitrate/nitrite DNA-binding response regulator  37.86 
 
 		 206 aa  149  3e-35  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  36.59 
 
 		 213 aa  148  7e-35  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013132  Cpin_1732  two component transcriptional regulator, LuxR family  39.51 
 
 		 211 aa  146  2.0000000000000003e-34  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008554  Sfum_1664  two component LuxR family transcriptional regulator  37.91 
 
 		 218 aa  143  2e-33  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.49018  normal  1 
 
 
-
 
NC_013730  Slin_6527  two component transcriptional regulator, LuxR family  34.58 
 
 		 215 aa  143  2e-33  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009952  Dshi_2345  two component transcriptional regulator  36.59 
 
 		 220 aa  142  3e-33  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.499423  normal  0.134206 
 
 
-
 
NC_004310  BR0342  LuxR family DNA-binding response regulator  35.12 
 
 		 213 aa  142  5e-33  Brucella suis 1330  Bacteria  normal  0.0601944  n/a   
 
 
-
 
NC_009505  BOV_0358  LuxR family DNA-binding response regulator  35.12 
 
 		 213 aa  142  5e-33  Brucella ovis ATCC 25840  Bacteria  normal  0.363  n/a   
 
 
-
 
NC_011368  Rleg2_4527  two component transcriptional regulator, LuxR family  35.61 
 
 		 223 aa  141  7e-33  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  0.658241 
 
 
-
 
NC_010571  Oter_1700  two component LuxR family transcriptional regulator  33.17 
 
 		 213 aa  141  7e-33  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.226192 
 
 
-
 
NC_009441  Fjoh_0559  two component LuxR family transcriptional regulator  34.63 
 
 		 211 aa  141  9e-33  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0841173  n/a   
 
 
-
 
NC_013061  Phep_2735  response regulator receiver  34.88 
 
 		 224 aa  140  9.999999999999999e-33  Pedobacter heparinus DSM 2366  Bacteria  normal  0.0572845  normal  1 
 
 
-
 
NC_007519  Dde_2674  two component LuxR family transcriptional regulator  34.93 
 
 		 215 aa  139  3e-32  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.721789  n/a   
 
 
-
 
NC_008255  CHU_0105  two component LuxR family transcriptional regulator  36.02 
 
 		 215 aa  139  3e-32  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0303042  normal  0.309888 
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  32.52 
 
 		 214 aa  138  6e-32  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_010627  Bphy_7761  two component LuxR family transcriptional regulator  33.5 
 
 		 213 aa  138  7e-32  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  34.72 
 
 		 242 aa  136  2e-31  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_007519  Dde_0977  two component LuxR family transcriptional regulator  33.01 
 
 		 223 aa  136  2e-31  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  decreased coverage  0.00800748  n/a   
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  35.82 
 
 		 224 aa  136  3.0000000000000003e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  37.2 
 
 		 218 aa  135  5e-31  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_008255  CHU_1317  response regulator  32.72 
 
 		 220 aa  135  5e-31  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.500574  normal  0.0503905 
 
 
-
 
NC_010682  Rpic_3729  two component transcriptional regulator, LuxR family  34.98 
 
 		 214 aa  135  6.0000000000000005e-31  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008825  Mpe_A1026  response regulator protein  33.5 
 
 		 217 aa  135  6.0000000000000005e-31  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  37.2 
 
 		 218 aa  134  9.999999999999999e-31  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  34.83 
 
 		 213 aa  134  9.999999999999999e-31  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  37.2 
 
 		 218 aa  134  9.999999999999999e-31  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009831  Ssed_0905  putative nitrate/nitrite DNA-binding response regulator  33.98 
 
 		 206 aa  133  9.999999999999999e-31  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0826046  hitchhiker  0.00000533581 
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  33.02 
 
 		 224 aa  134  9.999999999999999e-31  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_1953  response regulator  35.41 
 
 		 214 aa  134  9.999999999999999e-31  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00404481  n/a   
 
 
-
 
NC_009092  Shew_1824  response regulator  35.41 
 
 		 229 aa  134  9.999999999999999e-31  Shewanella loihica PV-4  Bacteria  normal  0.152948  normal  1 
 
 
-
 
NC_002939  GSU1293  LuxR family DNA-binding response regulator  33.66 
 
 		 216 aa  133  1.9999999999999998e-30  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_013204  Elen_1743  two component transcriptional regulator, LuxR family  32.86 
 
 		 214 aa  133  1.9999999999999998e-30  Eggerthella lenta DSM 2243  Bacteria  normal  0.370009  normal  0.039988 
 
 
-
 
NC_009078  BURPS1106A_A3133  LuxR family DNA-binding response regulator  33 
 
 		 215 aa  133  1.9999999999999998e-30  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_002939  GSU0254  LuxR family DNA-binding response regulator  33.66 
 
 		 215 aa  132  3e-30  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_013132  Cpin_2907  two component transcriptional regulator, LuxR family  35.85 
 
 		 222 aa  132  3e-30  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0590247  normal  1 
 
 
-
 
NC_012856  Rpic12D_3406  two component transcriptional regulator, LuxR family  34.48 
 
 		 214 aa  132  3e-30  Ralstonia pickettii 12D  Bacteria  normal  0.588591  normal  1 
 
 
-
 
NC_009524  PsycPRwf_1429  two component LuxR family transcriptional regulator  35.55 
 
 		 211 aa  132  3.9999999999999996e-30  Psychrobacter sp. PRwf-1  Bacteria  normal  1  normal  0.85494 
 
 
-
 
NC_012854  Rleg_6399  two component transcriptional regulator, LuxR family  33.01 
 
 		 214 aa  131  5e-30  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.139442 
 
 
-
 
NC_008578  Acel_1760  two component LuxR family transcriptional regulator  35.05 
 
 		 303 aa  131  6e-30  Acidothermus cellulolyticus 11B  Bacteria  normal  1  normal  0.887336 
 
 
-
 
NC_009075  BURPS668_A3248  LuxR family DNA-binding response regulator  32.51 
 
 		 215 aa  131  6e-30  Burkholderia pseudomallei 668  Bacteria  normal  0.780539  n/a   
 
 
-
 
NC_006349  BMAA2071  LuxR family DNA-binding response regulator  32.51 
 
 		 215 aa  131  6.999999999999999e-30  Burkholderia mallei ATCC 23344  Bacteria  normal  1  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1463  LuxR family DNA-binding response regulator  32.51 
 
 		 215 aa  131  6.999999999999999e-30  Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_011662  Tmz1t_1954  two component transcriptional regulator, LuxR family  31.71 
 
 		 220 aa  131  6.999999999999999e-30  Thauera sp. MZ1T  Bacteria  normal  0.228638  n/a   
 
 
-
 
NC_008784  BMASAVP1_1100  LuxR family DNA-binding response regulator  32.51 
 
 		 215 aa  131  6.999999999999999e-30  Burkholderia mallei SAVP1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008835  BMA10229_1379  LuxR family DNA-binding response regulator  32.51 
 
 		 215 aa  131  6.999999999999999e-30  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_009079  BMA10247_A2364  LuxR family DNA-binding response regulator  32.51 
 
 		 215 aa  131  6.999999999999999e-30  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_009831  Ssed_2455  response regulator  34.45 
 
 		 214 aa  131  7.999999999999999e-30  Shewanella sediminis HAW-EB3  Bacteria  normal  0.140183  normal  0.431169 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  36.82 
 
 		 216 aa  131  9e-30  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_013131  Caci_7589  two component transcriptional regulator, LuxR family  32.57 
 
 		 225 aa  130  1.0000000000000001e-29  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.438424  normal  0.37363 
 
 
-
 
NC_002936  DET1063  LuxR family DNA-binding response regulator  33.82 
 
 		 232 aa  130  1.0000000000000001e-29  Dehalococcoides ethenogenes 195  Bacteria  normal  0.815436  n/a   
 
 
-
 
NC_002939  GSU3229  LuxR family DNA-binding response regulator  33.03 
 
 		 229 aa  130  1.0000000000000001e-29  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_011769  DvMF_1021  two component transcriptional regulator, LuxR family  35.58 
 
 		 216 aa  130  1.0000000000000001e-29  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.794365 
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  34.42 
 
 		 253 aa  130  2.0000000000000002e-29  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_007650  BTH_II2335  LuxR family DNA-binding response regulator  32.02 
 
 		 215 aa  129  2.0000000000000002e-29  Burkholderia thailandensis E264  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_1417  response regulator receiver protein  31.96 
 
 		 234 aa  130  2.0000000000000002e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.0224272 
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  33.81 
 
 		 213 aa  130  2.0000000000000002e-29  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_013730  Slin_0700  two component transcriptional regulator, LuxR family  32.57 
 
 		 218 aa  129  2.0000000000000002e-29  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00980919  normal  0.316207 
 
 
-
 
NC_010506  Swoo_3747  two component LuxR family transcriptional regulator  32.2 
 
 		 206 aa  129  3e-29  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009457  VC0395_A0896  LuxR family transcriptional regulator  32.85 
 
 		 216 aa  129  3e-29  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_014230  CA2559_12543  Transcriptional regulator  30.58 
 
 		 207 aa  129  3e-29  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.204025  n/a   
 
 
-
 
NC_012880  Dd703_2482  two component transcriptional regulator, LuxR family  34.3 
 
 		 211 aa  129  4.0000000000000003e-29  Dickeya dadantii Ech703  Bacteria  normal  0.46622  n/a   
 
 
-
 
NC_008346  Swol_0186  response regulator receiver protein  34.87 
 
 		 213 aa  129  4.0000000000000003e-29  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  decreased coverage  0.00000327076  n/a   
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  32.23 
 
 		 213 aa  129  4.0000000000000003e-29  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013456  VEA_003136  transcriptional regulator LuxR family protein  34.13 
 
 		 212 aa  129  4.0000000000000003e-29  Vibrio sp. Ex25  Bacteria  normal  0.12843  n/a   
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  31.86 
 
 		 224 aa  128  5.0000000000000004e-29  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_009455  DehaBAV1_0945  two component LuxR family transcriptional regulator  33.33 
 
 		 232 aa  128  5.0000000000000004e-29  Dehalococcoides sp. BAV1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010524  Lcho_1782  two component LuxR family transcriptional regulator  33.99 
 
 		 214 aa  128  6e-29  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000000360675 
 
 
-
 
NC_009921  Franean1_5840  two component LuxR family transcriptional regulator  33.64 
 
 		 237 aa  128  6e-29  Frankia sp. EAN1pec  Bacteria  normal  0.0206065  normal  0.380036 
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  33.33 
 
 		 225 aa  128  6e-29  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_009456  VC0395_0622  transcriptional regulator UhpA  32.37 
 
 		 208 aa  128  6e-29  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_010625  Bphy_6469  two component LuxR family transcriptional regulator  33.5 
 
 		 213 aa  128  7.000000000000001e-29  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.53826 
 
 
-
 
NC_008321  Shewmr4_1547  response regulator  33.49 
 
 		 214 aa  127  8.000000000000001e-29  Shewanella sp. MR-4  Bacteria  hitchhiker  0.0000288339  normal  1 
 
 
-
 
NC_008577  Shewana3_1608  response regulator  33.49 
 
 		 214 aa  127  8.000000000000001e-29  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000660452  normal  0.150334 
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  35.58 
 
 		 221 aa  127  9.000000000000001e-29  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_012669  Bcav_3541  two component transcriptional regulator, LuxR family  33.17 
 
 		 211 aa  127  9.000000000000001e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.485125  normal  0.513005 
 
 
-
 
NC_004347  SO_1860  response regulator  33.49 
 
 		 214 aa  127  1.0000000000000001e-28  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007777  Francci3_0765  two component LuxR family transcriptional regulator  33.64 
 
 		 237 aa  127  1.0000000000000001e-28  Frankia sp. CcI3  Bacteria  normal  0.272345  normal  1 
 
 
-
 
NC_008061  Bcen_5187  two component LuxR family transcriptional regulator  32.51 
 
 		 214 aa  127  1.0000000000000001e-28  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_008322  Shewmr7_1614  response regulator  33.49 
 
 		 214 aa  127  1.0000000000000001e-28  Shewanella sp. MR-7  Bacteria  unclonable  0.000000746753  normal  0.505035 
 
 
-
 
NC_009441  Fjoh_4628  two component LuxR family transcriptional regulator  32.87 
 
 		 219 aa  127  1.0000000000000001e-28  Flavobacterium johnsoniae UW101  Bacteria  normal  1  n/a   
 
 
-
 
NC_010515  Bcenmc03_4563  two component LuxR family transcriptional regulator  32.51 
 
 		 214 aa  127  1.0000000000000001e-28  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  0.0560765 
 
 
-
 
NC_008543  Bcen2424_5672  two component LuxR family transcriptional regulator  32.51 
 
 		 214 aa  127  1.0000000000000001e-28  Burkholderia cenocepacia HI2424  Bacteria  normal  1  hitchhiker  0.00685344 
 
 
-
 
NC_009441  Fjoh_1987  two component LuxR family transcriptional regulator  32.54 
 
 		 213 aa  127  2.0000000000000002e-28  Flavobacterium johnsoniae UW101  Bacteria  normal  0.429674  n/a   
 
 
-
 
NC_010571  Oter_1551  two component LuxR family transcriptional regulator  33.81 
 
 		 229 aa  126  2.0000000000000002e-28  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.460798 
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  31.08 
 
 		 223 aa  126  2.0000000000000002e-28  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.0556432 
 
 
-
 
NC_009664  Krad_3810  two component transcriptional regulator, LuxR family  32.41 
 
 		 236 aa  126  2.0000000000000002e-28  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.225059  normal  0.0261757 
 
 
-
 
NC_009997  Sbal195_2677  response regulator  33.02 
 
 		 214 aa  126  2.0000000000000002e-28  Shewanella baltica OS195  Bacteria  normal  0.0738952  normal  0.957867 
 
 
-
 
NC_011663  Sbal223_1782  response regulator  33.02 
 
 		 214 aa  126  2.0000000000000002e-28  Shewanella baltica OS223  Bacteria  normal  0.0381154  hitchhiker  0.0000000750596 
 
 
-
 
NC_009665  Shew185_2600  response regulator  33.02 
 
 		 214 aa  126  2.0000000000000002e-28  Shewanella baltica OS185  Bacteria  hitchhiker  0.000388579  n/a   
 
 
-
 
NC_013205  Aaci_0385  two component transcriptional regulator, LuxR family  33.5 
 
 		 224 aa  126  2.0000000000000002e-28  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  1  n/a   
 
 
-
 
NC_009052  Sbal_2562  response regulator  33.02 
 
 		 214 aa  126  2.0000000000000002e-28  Shewanella baltica OS155  Bacteria  normal  0.0171044  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>