Gene VC0395_A0896 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A0896 
Symbol 
ID5135814 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand+ 
Start bp910570 
End bp911220 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content47% 
IMG OID640532354 
ProductLuxR family transcriptional regulator 
Protein accessionYP_001216842 
Protein GI147674446 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGTGT TTATGGATAA ACCAATCAGA GTGGTGATGG TGGATGATCA TCAGGTGGTG 
TTGGATGGTT TTATTGCGCG TTTAGAGCAA GAGCCGGAAA TCGAGGTCGT CGCCACCGCG 
AGTAATGGAT TGGAAGCTTT AGAATTGGTC AAACTTCACC AACCGGATGT GGTGCTGATG 
GATGTGAGTA TGCCGATCAT GAACGGTATT GAAGCCACCC GCTTGATCAA AGAAGAAGTT 
CCTCACACCA AAGTATTGAT GCTGACCATG CATGATAACC GCGAGTACAT TATGCAAGTG 
ATGCAAGCCG GCGCAATGGG CTACATGCTC AAAGAAATCT CAGCACTGAA AATGGTGCAA 
GCGATCAAAA CGGTTCATCA AGGCGCGACG TACTTCTGCG AATCCACCAC CTCGACACTG 
TTTAGCCAAG AGATTTTACC TGTGGCGAAT AAGCCAAACC CGCTGAGCCG CCGTGAAGAG 
GCAATTTTAC GTATGGTTGC ACAAGGTTGC AGCAGTAAAA AAATCGCGAC CTTGCTGAAT 
ATCAGCTATC GCACGGTCGA AACCCATAGG CAAAATATTA AGCATAAGCT CGACATCCAC 
TCCACGGCAG AGTTGGCTCA ATACGCGCTA CAACATGGTT TACTGGAATG A
 
Protein sequence
MEVFMDKPIR VVMVDDHQVV LDGFIARLEQ EPEIEVVATA SNGLEALELV KLHQPDVVLM 
DVSMPIMNGI EATRLIKEEV PHTKVLMLTM HDNREYIMQV MQAGAMGYML KEISALKMVQ 
AIKTVHQGAT YFCESTTSTL FSQEILPVAN KPNPLSRREE AILRMVAQGC SSKKIATLLN 
ISYRTVETHR QNIKHKLDIH STAELAQYAL QHGLLE