| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3199 |
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| Symbol | |
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| ID | 7973432 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3374063 |
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| End bp | 3374851 |
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| Gene Length | 789 bp |
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| Protein Length | 262 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793784 |
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| Product | two component transcriptional regulator, LuxR family |
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| Protein accession | YP_002945083 |
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| Protein GI | 239816173 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGACA CCACTCCTCC TTCCGACGCG CCGGATGCCG ACCACCTGCC GGAGCGCCGG
AAAGCCAGCC CGCCTGGCCT GTGTCCACCG CCCGAACCGC TGTGGCCGCA CTTCCTCACC
GGGCAGGAAG ACGCGCCGGT GCGCGTGCTG CTCATCGACG ACGACGAATT CATGCGGCGC
GTGATCGCCC AGGAACTGCT GTCGGACATG CGCATCCAGC TCGAAGGGCA AGGCAGCAGC
GTGCGCGACG GCCGCCGCCT GCTGGCCACC CACGAGTTCG ACGTGCTGAT GGTCGACCTG
CGGCTGGGCG ACGGCTCGGG CTTCGACCTG ATCCGCGAGG CGCGCAAGCT GCACCGCTAC
TGCGAGATCA TCGTGATCTC CGCGCTGGAG GACGATGCCC ACGTGATGCA CGCCTTCGAG
CTCGGCGCCA CCGGCTACCT GCTCAAGCAT GCCTGGCTGC AGAGCTTTGC CGAGGCCGTG
CTGCAGGTGG TCAACGGCGG CGCGGCCATC ACGCCCAAGC TGACGCGCCG GCTGCTCACG
CGCATGAACC TGCAGGGCAG CGGCGAGCGG CCGCCAACGG AAACGCCGCT GCGCGAAGCC
ACGCTGACGG CGCGCGAACG CGAGGTGCTG CGCTTCGTGG CGCGCGGCTG CGTCTCCAAG
GAGATCAGCG TGCGGCTCGG CATCTCGGGG CAGACCGTCA ACGCCCACAT CAAGAACATC
TACAAGAAGC TGCATGTGCA TTCGCGCGCG CAGGCCGTGA GCCTGGCCAC CCACACCGGC
CAGCTCTGA
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| Protein sequence | MSDTTPPSDA PDADHLPERR KASPPGLCPP PEPLWPHFLT GQEDAPVRVL LIDDDEFMRR
VIAQELLSDM RIQLEGQGSS VRDGRRLLAT HEFDVLMVDL RLGDGSGFDL IREARKLHRY
CEIIVISALE DDAHVMHAFE LGATGYLLKH AWLQSFAEAV LQVVNGGAAI TPKLTRRLLT
RMNLQGSGER PPTETPLREA TLTAREREVL RFVARGCVSK EISVRLGISG QTVNAHIKNI
YKKLHVHSRA QAVSLATHTG QL
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