More than 300 homologs were found in PanDaTox collection
for query gene Vapar_3199 on replicon NC_012791
Organism: Variovorax paradoxus S110



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_012791  Vapar_3199  two component transcriptional regulator, LuxR family  100 
 
 		 262 aa  535  1e-151  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_1851  two component LuxR family transcriptional regulator  59.03 
 
 		 262 aa  270  2e-71  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.467917  normal  0.53175 
 
 
-
 
NC_008781  Pnap_3628  two component LuxR family transcriptional regulator  53.88 
 
 		 292 aa  266  2e-70  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  0.350857 
 
 
-
 
NC_007948  Bpro_2543  two component LuxR family transcriptional regulator  58.08 
 
 		 230 aa  260  1e-68  Polaromonas sp. JS666  Bacteria  normal  0.149636  normal  0.0443917 
 
 
-
 
NC_011992  Dtpsy_1772  two component transcriptional regulator, LuxR family  52.12 
 
 		 262 aa  253  2.0000000000000002e-66  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_010002  Daci_3380  two component LuxR family transcriptional regulator  53.3 
 
 		 259 aa  247  1e-64  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.277634 
 
 
-
 
NC_007974  Rmet_4986  two component LuxR family transcriptional regulator  38.5 
 
 		 237 aa  133  3e-30  Cupriavidus metallidurans CH34  Bacteria  normal  0.170484  normal  0.313407 
 
 
-
 
NC_009511  Swit_0804  two component LuxR family transcriptional regulator  38.99 
 
 		 229 aa  131  1.0000000000000001e-29  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003295  RSc3161  two component response regulator transcription regulator protein  34.67 
 
 		 231 aa  125  7e-28  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013757  Gobs_3437  two component transcriptional regulator, LuxR family  33.33 
 
 		 248 aa  122  6e-27  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.39912  n/a   
 
 
-
 
NC_012791  Vapar_0939  two component transcriptional regulator, LuxR family  35.71 
 
 		 247 aa  121  9.999999999999999e-27  Variovorax paradoxus S110  Bacteria  normal  0.224899  n/a   
 
 
-
 
NC_013595  Sros_1417  response regulator receiver protein  35.16 
 
 		 234 aa  120  3e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.0224272 
 
 
-
 
NC_008781  Pnap_4084  two component LuxR family transcriptional regulator  31.62 
 
 		 246 aa  119  4.9999999999999996e-26  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007802  Jann_3515  two component LuxR family transcriptional regulator  40.33 
 
 		 214 aa  118  9.999999999999999e-26  Jannaschia sp. CCS1  Bacteria  normal  0.150532  hitchhiker  0.00248481 
 
 
-
 
NC_013159  Svir_00210  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  34.88 
 
 		 221 aa  117  9.999999999999999e-26  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  0.133182 
 
 
-
 
NC_013501  Rmar_1005  two component transcriptional regulator, LuxR family  35.1 
 
 		 211 aa  116  3.9999999999999997e-25  Rhodothermus marinus DSM 4252  Bacteria  normal  1  n/a   
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  36.79 
 
 		 223 aa  115  7.999999999999999e-25  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.0556432 
 
 
-
 
NC_009921  Franean1_5840  two component LuxR family transcriptional regulator  31.82 
 
 		 237 aa  115  1.0000000000000001e-24  Frankia sp. EAN1pec  Bacteria  normal  0.0206065  normal  0.380036 
 
 
-
 
NC_007908  Rfer_3373  two component LuxR family transcriptional regulator  32.77 
 
 		 262 aa  114  1.0000000000000001e-24  Rhodoferax ferrireducens T118  Bacteria  normal  0.492418  n/a   
 
 
-
 
NC_013595  Sros_0553  response regulator receiver protein  36.45 
 
 		 213 aa  114  1.0000000000000001e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  0.82888  normal  1 
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  33.33 
 
 		 228 aa  114  1.0000000000000001e-24  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_013172  Bfae_25060  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  35.21 
 
 		 222 aa  114  2.0000000000000002e-24  Brachybacterium faecium DSM 4810  Bacteria  normal  0.444591  n/a   
 
 
-
 
NC_009921  Franean1_6933  two component LuxR family transcriptional regulator  34.29 
 
 		 244 aa  114  2.0000000000000002e-24  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.322421 
 
 
-
 
NC_013947  Snas_2579  two component transcriptional regulator, LuxR family  34.26 
 
 		 213 aa  114  2.0000000000000002e-24  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  0.0500394 
 
 
-
 
NC_007777  Francci3_2258  two component LuxR family transcriptional regulator  33.18 
 
 		 224 aa  113  3e-24  Frankia sp. CcI3  Bacteria  normal  0.124896  normal  0.0124728 
 
 
-
 
NC_007777  Francci3_3253  two component LuxR family transcriptional regulator  33.33 
 
 		 213 aa  113  3e-24  Frankia sp. CcI3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010524  Lcho_3952  two component LuxR family transcriptional regulator  33.69 
 
 		 222 aa  112  5e-24  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.173353 
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  33.33 
 
 		 253 aa  112  5e-24  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_013131  Caci_0094  two component transcriptional regulator, LuxR family  32.09 
 
 		 233 aa  112  5e-24  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  0.0277195 
 
 
-
 
NC_014165  Tbis_0775  LuxR family two component transcriptional regulator  32.71 
 
 		 234 aa  111  1.0000000000000001e-23  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  0.336237 
 
 
-
 
NC_014148  Plim_0373  response regulator receiver  30.05 
 
 		 220 aa  110  2.0000000000000002e-23  Planctomyces limnophilus DSM 3776  Bacteria  normal  1  n/a   
 
 
-
 
NC_007947  Mfla_0447  two component LuxR family transcriptional regulator  36.82 
 
 		 244 aa  110  2.0000000000000002e-23  Methylobacillus flagellatus KT  Bacteria  normal  0.013193  normal  0.6128 
 
 
-
 
NC_009921  Franean1_4062  two component LuxR family transcriptional regulator  34.56 
 
 		 216 aa  110  2.0000000000000002e-23  Frankia sp. EAN1pec  Bacteria  normal  0.0448793  normal  0.300284 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  34.22 
 
 		 227 aa  110  2.0000000000000002e-23  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  33.81 
 
 		 213 aa  110  2.0000000000000002e-23  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_008825  Mpe_A1249  response regulator  33.88 
 
 		 245 aa  110  2.0000000000000002e-23  Methylibium petroleiphilum PM1  Bacteria  normal  0.0947405  normal  0.0892263 
 
 
-
 
NC_007333  Tfu_2950  LuxR response regulator receiver  31.92 
 
 		 221 aa  110  3e-23  Thermobifida fusca YX  Bacteria  normal  1  n/a   
 
 
-
 
NC_007777  Francci3_0765  two component LuxR family transcriptional regulator  30.91 
 
 		 237 aa  110  3e-23  Frankia sp. CcI3  Bacteria  normal  0.272345  normal  1 
 
 
-
 
NC_013132  Cpin_4160  two component transcriptional regulator, LuxR family  32.55 
 
 		 215 aa  110  3e-23  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0201669  normal  0.0925574 
 
 
-
 
NC_007973  Rmet_0612  two component LuxR family transcriptional regulator  34.78 
 
 		 231 aa  110  3e-23  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.105579 
 
 
-
 
NC_009953  Sare_1528  two component LuxR family transcriptional regulator  31.6 
 
 		 212 aa  109  4.0000000000000004e-23  Salinispora arenicola CNS-205  Bacteria  normal  0.212037  hitchhiker  0.000165031 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  37.26 
 
 		 222 aa  109  4.0000000000000004e-23  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal  1 
 
 
-
 
NC_014158  Tpau_4145  two component transcriptional regulator, LuxR family  34.31 
 
 		 216 aa  109  5e-23  Tsukamurella paurometabola DSM 20162  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_0928  response regulator receiver protein  31.92 
 
 		 207 aa  109  5e-23  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0707495  normal  1 
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  29.86 
 
 		 231 aa  108  6e-23  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  1  n/a   
 
 
-
 
NC_010002  Daci_0377  two component LuxR family transcriptional regulator  35.43 
 
 		 245 aa  108  7.000000000000001e-23  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013093  Amir_0097  two component transcriptional regulator, LuxR family  33.49 
 
 		 209 aa  108  7.000000000000001e-23  Actinosynnema mirum DSM 43827  Bacteria  normal  0.142871  n/a   
 
 
-
 
NC_009972  Haur_1563  two component LuxR family transcriptional regulator  33.19 
 
 		 257 aa  108  7.000000000000001e-23  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.781509  n/a   
 
 
-
 
NC_009380  Strop_1577  response regulator receiver  31.6 
 
 		 212 aa  108  7.000000000000001e-23  Salinispora tropica CNB-440  Bacteria  normal  1  normal  0.967001 
 
 
-
 
NC_013947  Snas_0541  two component transcriptional regulator, LuxR family  30.59 
 
 		 221 aa  108  8.000000000000001e-23  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.318618  normal  1 
 
 
-
 
NC_009921  Franean1_1971  two component LuxR family transcriptional regulator  34.11 
 
 		 216 aa  108  8.000000000000001e-23  Frankia sp. EAN1pec  Bacteria  normal  0.356635  normal  0.773651 
 
 
-
 
NC_003909  BCE_1563  DNA-binding response regulator  32.86 
 
 		 210 aa  108  1e-22  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.0000000942452  n/a   
 
 
-
 
NC_005945  BAS1348  DNA-binding response regulator  32.86 
 
 		 210 aa  108  1e-22  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.0000440829  n/a   
 
 
-
 
NC_005957  BT9727_1322  response regulator  32.86 
 
 		 210 aa  108  1e-22  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  7.30192e-17  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1363  two component LuxR family transcriptional regulator  32.86 
 
 		 210 aa  108  1e-22  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.0039551  n/a   
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  31.92 
 
 		 242 aa  108  1e-22  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_007530  GBAA_1457  DNA-binding response regulator  32.86 
 
 		 210 aa  108  1e-22  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.0000538049  n/a   
 
 
-
 
NC_009674  Bcer98_1160  two component LuxR family transcriptional regulator  32.86 
 
 		 210 aa  108  1e-22  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  1  n/a   
 
 
-
 
NC_011658  BCAH187_A1601  DNA-binding response regulator  32.86 
 
 		 210 aa  108  1e-22  Bacillus cereus AH187  Bacteria  unclonable  0.00000000136266  n/a   
 
 
-
 
NC_013131  Caci_6963  two component transcriptional regulator, LuxR family  31.8 
 
 		 225 aa  107  2e-22  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.029709  normal  1 
 
 
-
 
NC_007974  Rmet_5165  two component LuxR family transcriptional regulator  35.45 
 
 		 231 aa  107  2e-22  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.162111 
 
 
-
 
NC_013739  Cwoe_2525  two component transcriptional regulator, LuxR family  36.36 
 
 		 215 aa  107  2e-22  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011772  BCG9842_B3849  DNA-binding response regulator  32.38 
 
 		 210 aa  107  2e-22  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000308683  hitchhiker  0.000000000350245 
 
 
-
 
NC_006274  BCZK1321  response regulator  32.86 
 
 		 210 aa  107  3e-22  Bacillus cereus E33L  Bacteria  hitchhiker  0.00000332221  n/a   
 
 
-
 
NC_013131  Caci_2656  two component transcriptional regulator, LuxR family  33.94 
 
 		 226 aa  107  3e-22  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.161573  normal  1 
 
 
-
 
NC_014210  Ndas_4080  two component transcriptional regulator, LuxR family  32.08 
 
 		 241 aa  107  3e-22  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  0.858367 
 
 
-
 
NC_014210  Ndas_2024  two component transcriptional regulator, LuxR family  34.96 
 
 		 220 aa  106  4e-22  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.876474  normal  1 
 
 
-
 
NC_010625  Bphy_6192  two component LuxR family transcriptional regulator  30.14 
 
 		 231 aa  106  4e-22  Burkholderia phymatum STM815  Bacteria  normal  0.446565  normal  0.0472092 
 
 
-
 
NC_009523  RoseRS_4275  two component LuxR family transcriptional regulator  32.41 
 
 		 226 aa  106  4e-22  Roseiflexus sp. RS-1  Bacteria  normal  0.798613  normal  0.287125 
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  32.27 
 
 		 250 aa  105  5e-22  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.631776 
 
 
-
 
NC_011773  BCAH820_1531  DNA-binding response regulator  32.38 
 
 		 210 aa  106  5e-22  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  8.64189e-24 
 
 
-
 
NC_011725  BCB4264_A1495  DNA-binding response regulator  32.38 
 
 		 210 aa  105  6e-22  Bacillus cereus B4264  Bacteria  unclonable  0.0000174821  n/a   
 
 
-
 
NC_014210  Ndas_1477  two component transcriptional regulator, LuxR family  34.25 
 
 		 234 aa  105  6e-22  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.594471  normal  1 
 
 
-
 
NC_011831  Cagg_1769  two component transcriptional regulator, LuxR family  32.37 
 
 		 219 aa  105  6e-22  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.221401  normal  0.0578747 
 
 
-
 
NC_013510  Tcur_1532  two component transcriptional regulator, LuxR family  35.35 
 
 		 220 aa  105  7e-22  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0114765  n/a   
 
 
-
 
NC_008699  Noca_0945  response regulator receiver  31.6 
 
 		 216 aa  105  8e-22  Nocardioides sp. JS614  Bacteria  normal  0.0407172  n/a   
 
 
-
 
NC_009338  Mflv_3579  two component LuxR family transcriptional regulator  32.55 
 
 		 217 aa  105  8e-22  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.393396  normal  0.0540104 
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  30.37 
 
 		 215 aa  105  8e-22  Bacillus weihenstephanensis KBAB4  Bacteria  normal  1  n/a   
 
 
-
 
NC_005945  BAS5263  DNA-binding response regulator  30.7 
 
 		 215 aa  105  1e-21  Bacillus anthracis str. Sterne  Bacteria  normal  0.24037  n/a   
 
 
-
 
NC_005957  BT9727_5091  response regulator  30.7 
 
 		 215 aa  105  1e-21  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  1  n/a   
 
 
-
 
NC_006274  BCZK5108  response regulator  30.7 
 
 		 215 aa  105  1e-21  Bacillus cereus E33L  Bacteria  decreased coverage  0.00235048  n/a   
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  31.28 
 
 		 219 aa  104  1e-21  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal  1 
 
 
-
 
NC_007530  GBAA_5661  DNA-binding response regulator  30.7 
 
 		 215 aa  105  1e-21  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  1  n/a   
 
 
-
 
NC_011773  BCAH820_5506  DNA-binding response regulator  30.7 
 
 		 215 aa  105  1e-21  Bacillus cereus AH820  Bacteria  n/a    normal  1 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  33.64 
 
 		 226 aa  104  1e-21  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_008578  Acel_0518  two component LuxR family transcriptional regulator  33.33 
 
 		 225 aa  104  1e-21  Acidothermus cellulolyticus 11B  Bacteria  normal  1  normal  0.665179 
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  33.48 
 
 		 231 aa  105  1e-21  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal  1 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  31.75 
 
 		 216 aa  104  1e-21  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_013093  Amir_1549  two component transcriptional regulator, LuxR family  36.15 
 
 		 238 aa  104  1e-21  Actinosynnema mirum DSM 43827  Bacteria  normal  0.196807  n/a   
 
 
-
 
NC_013510  Tcur_1651  two component transcriptional regulator, LuxR family  31.8 
 
 		 218 aa  104  2e-21  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000163278  n/a   
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  32.3 
 
 		 230 aa  103  2e-21  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
NC_013124  Afer_1446  two component transcriptional regulator, LuxR family  31.13 
 
 		 223 aa  103  2e-21  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  1  n/a   
 
 
-
 
NC_009921  Franean1_2449  two component LuxR family transcriptional regulator  31.13 
 
 		 211 aa  103  2e-21  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.265588 
 
 
-
 
NC_009664  Krad_3810  two component transcriptional regulator, LuxR family  32.11 
 
 		 236 aa  103  2e-21  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.225059  normal  0.0261757 
 
 
-
 
NC_005945  BAS2109  LuxR family DNA-binding response regulator  29.3 
 
 		 209 aa  103  3e-21  Bacillus anthracis str. Sterne  Bacteria  normal  1  n/a   
 
 
-
 
NC_006274  BCZK2046  response regulator  29.3 
 
 		 209 aa  103  3e-21  Bacillus cereus E33L  Bacteria  normal  1  n/a   
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  34.26 
 
 		 209 aa  103  3e-21  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007530  GBAA_2265  LuxR family DNA-binding response regulator  29.3 
 
 		 209 aa  103  3e-21  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.201191  n/a   
 
 
-
 
NC_011773  BCAH820_2290  DNA-binding response regulator, LuxR family  29.3 
 
 		 209 aa  103  3e-21  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000736213 
 
 
-
 
NC_010184  BcerKBAB4_2087  two component LuxR family transcriptional regulator  29.3 
 
 		 213 aa  103  3e-21  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0358431  n/a   
 
 
-
 
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