| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4439 |
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| Symbol | |
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| ID | 7974113 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4679618 |
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| End bp | 4680292 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644795028 |
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| Product | two component transcriptional regulator, LuxR family |
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| Protein accession | YP_002946316 |
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| Protein GI | 239817406 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTGGTG GCGCCCTCGT TGTCGAGGGC AGCCGGGGCG TGTCGGAGCG CATGCGGCGC
ATCCTTGCCA CGGTGGCGCC CGGCCTGGAG CTGGCGGCCG CGTCAACGCA GGCCGAGGCC
CGCTTCATGC TGGCCGCGCA GGCCTTCAGC CTCGTGCTCG TGGGCATGGA CGGGCCGGAT
GGCGATGGCG CGGCATTGAT CCGCCACGTG CGCACGGCCC ATCCGCACAT CGACGCCATC
GCCATGTCGG AAACCGATGA TGACGGCCTG GTGGGCGCCG CCATTGCCGC GGGTGCGGTG
GGCTACGTGC TGACCGAGGC CGACGACGCC GAACTCGCGT TCCTGCTGCG CTCCATCGAA
CGCGGCGGCG CGCCGGTGGA TTCGCGCATT GCGCGCCGCA TCCTCGGCCT GTTCGCTGCT
TCCGCCCAGC CCAAGCCGAT TGCCATCCAC CCCGTGCCTG CGAGCCTGGC GGAAGGCAAG
CCGCTGCTGT CGCCGCGCGA GCTGAAGGTG CTGCGGCTCA TCGCCCAGGG CTGGAGCAAC
CAGCAGATCG CCGAGGCCGT GTCGCTTTCG GTCAACACCA TCGAGTTTCA CGCGAAGAAC
ATCTACCGCA AGCTGTCCGT CAAGTCGCGG ACCCAGGCGG TGCACCAGGC CACGCAGCAG
GGCCTCTTCA ACTGA
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| Protein sequence | MRGGALVVEG SRGVSERMRR ILATVAPGLE LAAASTQAEA RFMLAAQAFS LVLVGMDGPD
GDGAALIRHV RTAHPHIDAI AMSETDDDGL VGAAIAAGAV GYVLTEADDA ELAFLLRSIE
RGGAPVDSRI ARRILGLFAA SAQPKPIAIH PVPASLAEGK PLLSPRELKV LRLIAQGWSN
QQIAEAVSLS VNTIEFHAKN IYRKLSVKSR TQAVHQATQQ GLFN
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