| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3592 |
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| Symbol | |
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| ID | 7970667 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3795448 |
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| End bp | 3796155 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644794177 |
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| Product | two component transcriptional regulator, LuxR family |
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| Protein accession | YP_002945475 |
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| Protein GI | 239816565 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.356082 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCAATT CCAGGCCGGA AGCCGTCGAA GGCGTTTCCT TGAGCCCTTC GCTGGTGGTC
GAGGACGACC CCGCGATGCG CGAACGCCTC AGCCACGTGC TGGCCACGCT CAGCCACGCC
GCGCCGCAGA TCGCCTGGGC CGACAGCATT GCCGCGGCCA AGGAACTGCT CGGCGCGCAG
AGCTTCGGCA TCGCGCTGGT CGACATCGGA CTGCCGGACG GCAGCGGGGT CGAACTGATC
GGCTGGATGC AGGCGCAGCA TCCCAAGGTG CCCGCGGTGG TGATCTCGGC CTTCCGGACC
GAGGACGTCA TCTTCGCGGC GCTGCGGGCC GGCGCCATCG GCTACCTGCT GAAGGACCGC
GACGATCTCG AACTGGGCAT TGCGCTTCGC AGCATCGAGC AGGGGGGCTC GCCGATCGAT
CCGGCCATTG CGCGCCATAT CCTCGGCTGG CTCGCGGCGC AGCAGCCTTC GCCGCCCGCC
GTGTCGGCGG CCGATGCACC TGCTGCGCTG CCCGTCGCGC TGACGCCGCG GGAGCGCCGG
ATCCTCGAAC TCGTGGCGCA GGGGCTGAGC AACCGCGACA TGGCCGAATC GCTGTCGATC
TCCAGGCTGA CCGTGGAATG CCACACCAAG AACATCTACC GCAAGCTGGC CGTCAGCTCT
CGCACCGAAG CCGTCTACCA GGCCCGAAGG CACGGCTTGC TGGACTGA
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| Protein sequence | MSNSRPEAVE GVSLSPSLVV EDDPAMRERL SHVLATLSHA APQIAWADSI AAAKELLGAQ
SFGIALVDIG LPDGSGVELI GWMQAQHPKV PAVVISAFRT EDVIFAALRA GAIGYLLKDR
DDLELGIALR SIEQGGSPID PAIARHILGW LAAQQPSPPA VSAADAPAAL PVALTPRERR
ILELVAQGLS NRDMAESLSI SRLTVECHTK NIYRKLAVSS RTEAVYQARR HGLLD
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