More than 300 homologs were found in PanDaTox collection
for query gene Dfer_4502 on replicon NC_013037
Organism: Dyadobacter fermentans DSM 18053



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013037  Dfer_4502  two component transcriptional regulator, LuxR family  100 
 
 		 205 aa  412  1e-114  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.438194 
 
 
-
 
NC_013061  Phep_2962  response regulator receiver  52.2 
 
 		 206 aa  208  4e-53  Pedobacter heparinus DSM 2366  Bacteria  normal  0.117851  normal  1 
 
 
-
 
NC_013037  Dfer_1698  two component transcriptional regulator, LuxR family  46.57 
 
 		 207 aa  194  7e-49  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.126193 
 
 
-
 
NC_013132  Cpin_4551  two component transcriptional regulator, LuxR family  47.34 
 
 		 208 aa  180  1e-44  Chitinophaga pinensis DSM 2588  Bacteria  decreased coverage  0.000124934  normal  0.0275678 
 
 
-
 
NC_013132  Cpin_2387  two component transcriptional regulator, LuxR family  41.75 
 
 		 207 aa  173  9.999999999999999e-43  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.132486  normal  0.384012 
 
 
-
 
NC_013132  Cpin_1440  two component transcriptional regulator, LuxR family  44 
 
 		 208 aa  172  2.9999999999999996e-42  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013132  Cpin_2137  two component transcriptional regulator, LuxR family  45.27 
 
 		 211 aa  164  8e-40  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0335187  normal  1 
 
 
-
 
NC_013132  Cpin_4278  two component transcriptional regulator, LuxR family  39.81 
 
 		 213 aa  161  5.0000000000000005e-39  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  0.0894003 
 
 
-
 
NC_009441  Fjoh_1987  two component LuxR family transcriptional regulator  39.71 
 
 		 213 aa  155  3e-37  Flavobacterium johnsoniae UW101  Bacteria  normal  0.429674  n/a   
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  40 
 
 		 213 aa  148  6e-35  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013132  Cpin_1732  two component transcriptional regulator, LuxR family  40.76 
 
 		 211 aa  148  7e-35  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_5717  two component LuxR family transcriptional regulator  35.19 
 
 		 220 aa  146  2.0000000000000003e-34  Methylobacterium sp. 4-46  Bacteria  normal  0.873964  hitchhiker  0.00405289 
 
 
-
 
NC_008825  Mpe_A1026  response regulator protein  40.1 
 
 		 217 aa  145  4.0000000000000006e-34  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004310  BR0342  LuxR family DNA-binding response regulator  38.07 
 
 		 213 aa  144  6e-34  Brucella suis 1330  Bacteria  normal  0.0601944  n/a   
 
 
-
 
NC_009505  BOV_0358  LuxR family DNA-binding response regulator  38.07 
 
 		 213 aa  144  6e-34  Brucella ovis ATCC 25840  Bacteria  normal  0.363  n/a   
 
 
-
 
NC_011368  Rleg2_4527  two component transcriptional regulator, LuxR family  37.44 
 
 		 223 aa  143  2e-33  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  0.658241 
 
 
-
 
NC_009441  Fjoh_0559  two component LuxR family transcriptional regulator  35.32 
 
 		 211 aa  142  3e-33  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0841173  n/a   
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  36.08 
 
 		 213 aa  142  3e-33  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013730  Slin_6527  two component transcriptional regulator, LuxR family  36.62 
 
 		 215 aa  142  4e-33  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010552  BamMC406_5498  two component LuxR family transcriptional regulator  40.59 
 
 		 214 aa  140  9.999999999999999e-33  Burkholderia ambifaria MC40-6  Bacteria  normal  1  hitchhiker  0.00509748 
 
 
-
 
NC_012854  Rleg_6399  two component transcriptional regulator, LuxR family  35.78 
 
 		 214 aa  139  1.9999999999999998e-32  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.139442 
 
 
-
 
NC_003910  CPS_1260  putative nitrate/nitrite DNA-binding response regulator  34.48 
 
 		 206 aa  139  3e-32  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_008061  Bcen_5187  two component LuxR family transcriptional regulator  40.1 
 
 		 214 aa  139  3e-32  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_010515  Bcenmc03_4563  two component LuxR family transcriptional regulator  40.1 
 
 		 214 aa  139  3e-32  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  0.0560765 
 
 
-
 
NC_008543  Bcen2424_5672  two component LuxR family transcriptional regulator  40.1 
 
 		 214 aa  139  3e-32  Burkholderia cenocepacia HI2424  Bacteria  normal  1  hitchhiker  0.00685344 
 
 
-
 
NC_008391  Bamb_4946  two component LuxR family transcriptional regulator  40.1 
 
 		 214 aa  139  3.9999999999999997e-32  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  0.0203352 
 
 
-
 
NC_009708  YpsIP31758_3833  putative DNA-binding response regulator EsrB  37.5 
 
 		 210 aa  138  4.999999999999999e-32  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  1  n/a   
 
 
-
 
NC_010159  YpAngola_A3945  putative DNA-binding response regulator EsrB  37.5 
 
 		 210 aa  138  4.999999999999999e-32  Yersinia pestis Angola  Bacteria  normal  0.0480381  normal  1 
 
 
-
 
NC_010465  YPK_3919  two component LuxR family transcriptional regulator  37.5 
 
 		 210 aa  138  4.999999999999999e-32  Yersinia pseudotuberculosis YPIII  Bacteria  normal  1  n/a   
 
 
-
 
NC_007511  Bcep18194_B0026  two component LuxR family transcriptional regulator  40.4 
 
 		 214 aa  137  1e-31  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  35.38 
 
 		 218 aa  137  1e-31  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010524  Lcho_1782  two component LuxR family transcriptional regulator  36.55 
 
 		 214 aa  137  1e-31  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000000360675 
 
 
-
 
NC_006349  BMAA2071  LuxR family DNA-binding response regulator  39 
 
 		 215 aa  136  2e-31  Burkholderia mallei ATCC 23344  Bacteria  normal  1  n/a   
 
 
-
 
NC_007298  Daro_1400  two component LuxR family transcriptional regulator  34.93 
 
 		 216 aa  136  2e-31  Dechloromonas aromatica RCB  Bacteria  normal  0.973321  normal  0.0605156 
 
 
-
 
NC_009079  BMA10247_A2364  LuxR family DNA-binding response regulator  39 
 
 		 215 aa  136  2e-31  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1463  LuxR family DNA-binding response regulator  39 
 
 		 215 aa  136  2e-31  Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_007650  BTH_II2335  LuxR family DNA-binding response regulator  39.11 
 
 		 215 aa  136  2e-31  Burkholderia thailandensis E264  Bacteria  normal  1  n/a   
 
 
-
 
NC_008784  BMASAVP1_1100  LuxR family DNA-binding response regulator  39 
 
 		 215 aa  136  2e-31  Burkholderia mallei SAVP1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008835  BMA10229_1379  LuxR family DNA-binding response regulator  39 
 
 		 215 aa  136  2e-31  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_009075  BURPS668_A3248  LuxR family DNA-binding response regulator  39 
 
 		 215 aa  136  2e-31  Burkholderia pseudomallei 668  Bacteria  normal  0.780539  n/a   
 
 
-
 
NC_002939  GSU3229  LuxR family DNA-binding response regulator  34.58 
 
 		 229 aa  136  3.0000000000000003e-31  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_009832  Spro_1848  response regulator  34.76 
 
 		 218 aa  135  3.0000000000000003e-31  Serratia proteamaculans 568  Bacteria  normal  0.0524957  normal  1 
 
 
-
 
NC_012856  Rpic12D_3406  two component transcriptional regulator, LuxR family  38.54 
 
 		 214 aa  135  3.0000000000000003e-31  Ralstonia pickettii 12D  Bacteria  normal  0.588591  normal  1 
 
 
-
 
NC_007947  Mfla_1987  two component LuxR family transcriptional regulator  37.93 
 
 		 215 aa  135  3.0000000000000003e-31  Methylobacillus flagellatus KT  Bacteria  normal  0.0949899  normal  1 
 
 
-
 
NC_010627  Bphy_7761  two component LuxR family transcriptional regulator  37.5 
 
 		 213 aa  136  3.0000000000000003e-31  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013730  Slin_5409  two component transcriptional regulator, LuxR family  35.78 
 
 		 223 aa  135  3.0000000000000003e-31  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00220575  normal  1 
 
 
-
 
NC_008255  CHU_0105  two component LuxR family transcriptional regulator  38.39 
 
 		 215 aa  134  7.000000000000001e-31  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0303042  normal  0.309888 
 
 
-
 
NC_009078  BURPS1106A_A3133  LuxR family DNA-binding response regulator  38.5 
 
 		 215 aa  134  8e-31  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_013061  Phep_2735  response regulator receiver  37.32 
 
 		 224 aa  134  8e-31  Pedobacter heparinus DSM 2366  Bacteria  normal  0.0572845  normal  1 
 
 
-
 
NC_013456  VEA_003136  transcriptional regulator LuxR family protein  39.42 
 
 		 212 aa  134  9e-31  Vibrio sp. Ex25  Bacteria  normal  0.12843  n/a   
 
 
-
 
NC_009831  Ssed_0905  putative nitrate/nitrite DNA-binding response regulator  34.48 
 
 		 206 aa  134  9.999999999999999e-31  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0826046  hitchhiker  0.00000533581 
 
 
-
 
NC_010505  Mrad2831_3042  two component LuxR family transcriptional regulator  33.33 
 
 		 222 aa  134  9.999999999999999e-31  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.280021 
 
 
-
 
NC_012918  GM21_3105  two component transcriptional regulator, LuxR family  36.15 
 
 		 223 aa  134  9.999999999999999e-31  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_010682  Rpic_3729  two component transcriptional regulator, LuxR family  38.42 
 
 		 214 aa  134  9.999999999999999e-31  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010002  Daci_5322  two component LuxR family transcriptional regulator  37.81 
 
 		 220 aa  134  9.999999999999999e-31  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.929677 
 
 
-
 
NC_002939  GSU1293  LuxR family DNA-binding response regulator  34.91 
 
 		 216 aa  133  1.9999999999999998e-30  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_009457  VC0395_A0896  LuxR family transcriptional regulator  34.13 
 
 		 216 aa  133  1.9999999999999998e-30  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  33.65 
 
 		 218 aa  133  1.9999999999999998e-30  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_009441  Fjoh_4628  two component LuxR family transcriptional regulator  36.74 
 
 		 219 aa  133  1.9999999999999998e-30  Flavobacterium johnsoniae UW101  Bacteria  normal  1  n/a   
 
 
-
 
NC_009439  Pmen_0083  two component LuxR family transcriptional regulator  37.86 
 
 		 210 aa  132  3.9999999999999996e-30  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010506  Swoo_3747  two component LuxR family transcriptional regulator  34.8 
 
 		 206 aa  132  5e-30  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011312  VSAL_I2141  response regulator  32.21 
 
 		 214 aa  132  5e-30  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.126922  n/a   
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  32.7 
 
 		 218 aa  131  6e-30  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_011662  Tmz1t_1954  two component transcriptional regulator, LuxR family  34.6 
 
 		 220 aa  131  6e-30  Thauera sp. MZ1T  Bacteria  normal  0.228638  n/a   
 
 
-
 
NC_010524  Lcho_1402  two component LuxR family transcriptional regulator  35.07 
 
 		 211 aa  131  6e-30  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  32.7 
 
 		 218 aa  131  6e-30  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  34.78 
 
 		 213 aa  131  6.999999999999999e-30  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_007298  Daro_1572  two component LuxR family transcriptional regulator  36.59 
 
 		 218 aa  131  6.999999999999999e-30  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  0.972408 
 
 
-
 
NC_009727  CBUD_0828  response regulator  33.33 
 
 		 216 aa  130  1.0000000000000001e-29  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.0183204  n/a   
 
 
-
 
NC_007948  Bpro_1167  two component LuxR family transcriptional regulator  37.68 
 
 		 213 aa  130  1.0000000000000001e-29  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_0855  two component transcriptional regulator, LuxR family  31.37 
 
 		 223 aa  130  1.0000000000000001e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.082304  n/a   
 
 
-
 
NC_008044  TM1040_0876  two component LuxR family transcriptional regulator  33.5 
 
 		 233 aa  130  1.0000000000000001e-29  Ruegeria sp. TM1040  Bacteria  normal  0.481499  normal  0.345787 
 
 
-
 
NC_010117  COXBURSA331_A1168  LuxR family transcriptional regulator  33.33 
 
 		 216 aa  130  1.0000000000000001e-29  Coxiella burnetii RSA 331  Bacteria  normal  1  n/a   
 
 
-
 
NC_013205  Aaci_0385  two component transcriptional regulator, LuxR family  32.52 
 
 		 224 aa  130  1.0000000000000001e-29  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  1  n/a   
 
 
-
 
NC_003910  CPS_3271  response regulator  33.17 
 
 		 214 aa  130  2.0000000000000002e-29  Colwellia psychrerythraea 34H  Bacteria  normal  0.0222898  n/a   
 
 
-
 
NC_010086  Bmul_3186  two component LuxR family transcriptional regulator  40.1 
 
 		 214 aa  130  2.0000000000000002e-29  Burkholderia multivorans ATCC 17616  Bacteria  normal  1  normal  0.10411 
 
 
-
 
NC_008255  CHU_1317  response regulator  31.6 
 
 		 220 aa  129  2.0000000000000002e-29  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.500574  normal  0.0503905 
 
 
-
 
NC_008700  Sama_1873  response regulator receiver protein  33.17 
 
 		 215 aa  130  2.0000000000000002e-29  Shewanella amazonensis SB2B  Bacteria  normal  0.56104  normal  1 
 
 
-
 
NC_009921  Franean1_1971  two component LuxR family transcriptional regulator  35.96 
 
 		 216 aa  129  3e-29  Frankia sp. EAN1pec  Bacteria  normal  0.356635  normal  0.773651 
 
 
-
 
NC_013173  Dbac_2295  two component transcriptional regulator, LuxR family  35.19 
 
 		 222 aa  129  4.0000000000000003e-29  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.031577  n/a   
 
 
-
 
NC_010625  Bphy_7047  two component LuxR family transcriptional regulator  32.68 
 
 		 215 aa  128  5.0000000000000004e-29  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.976007 
 
 
-
 
NC_011146  Gbem_0451  two component transcriptional regulator, LuxR family  32.55 
 
 		 216 aa  128  5.0000000000000004e-29  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_009783  VIBHAR_02748  response regulator  31.75 
 
 		 214 aa  128  5.0000000000000004e-29  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010571  Oter_1700  two component LuxR family transcriptional regulator  32.85 
 
 		 213 aa  128  6e-29  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.226192 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  34.12 
 
 		 224 aa  128  6e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_014151  Cfla_0648  two component transcriptional regulator, LuxR family  34.01 
 
 		 211 aa  128  7.000000000000001e-29  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0377209  hitchhiker  0.00104431 
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  34.1 
 
 		 221 aa  128  7.000000000000001e-29  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_010625  Bphy_6469  two component LuxR family transcriptional regulator  37.5 
 
 		 213 aa  127  9.000000000000001e-29  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.53826 
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  36.76 
 
 		 211 aa  127  9.000000000000001e-29  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_009667  Oant_0443  two component LuxR family transcriptional regulator  36.92 
 
 		 213 aa  127  1.0000000000000001e-28  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_006368  lpp2699  transmission activator LetA  33.17 
 
 		 219 aa  127  1.0000000000000001e-28  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007511  Bcep18194_B2520  two component LuxR family transcriptional regulator  33.17 
 
 		 214 aa  127  1.0000000000000001e-28  Burkholderia sp. 383  Bacteria  normal  0.943169  normal  0.310419 
 
 
-
 
NC_012918  GM21_0467  two component transcriptional regulator, LuxR family  32.55 
 
 		 216 aa  127  1.0000000000000001e-28  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000507383 
 
 
-
 
NC_012803  Mlut_02970  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  33.49 
 
 		 227 aa  127  1.0000000000000001e-28  Micrococcus luteus NCTC 2665  Bacteria  normal  0.611463  n/a   
 
 
-
 
NC_008709  Ping_1192  transcriptional regulator of LuxR family protein  32.54 
 
 		 214 aa  127  1.0000000000000001e-28  Psychromonas ingrahamii 37  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013131  Caci_6963  two component transcriptional regulator, LuxR family  34.39 
 
 		 225 aa  126  2.0000000000000002e-28  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.029709  normal  1 
 
 
-
 
NC_012917  PC1_1369  two component transcriptional regulator, LuxR family  34.65 
 
 		 218 aa  126  2.0000000000000002e-28  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.380225  n/a   
 
 
-
 
NC_014210  Ndas_3120  two component transcriptional regulator, LuxR family  35.05 
 
 		 218 aa  126  2.0000000000000002e-28  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.954631  normal  1 
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  31.67 
 
 		 224 aa  126  2.0000000000000002e-28  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_1684  response regulator receiver protein  35.61 
 
 		 207 aa  127  2.0000000000000002e-28  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.966789 
 
 
-
 
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