| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3835 |
|---|
| Symbol | |
|---|
| ID | 5672198 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 4556961 |
|---|
| End bp | 4557614 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641242713 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001508133 |
|---|
| Protein GI | 158315625 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.760782 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0940778 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGACA CGATCAAGGT CGTCGTCGCG GACGACCATC CGCTCATCCG CGCCGGGGTC
AGGGCGCTCC TGCTGTCCCT GGACGACCTG GACCTCGTCG GGGAAGCCGC GGACGGCGAC
GAGGCCATCA GGATCGCCCG TGCCACCCGG CCCGACGTCG TCCTCATGGA CCTGCACATG
CCCGGTACCG ACGGCGTCAC CGCCACCCGG TCGATCACCG CCGAACTTCC CGACACAGCA
GTGCTCGTGG TCACCATGGT CGAGGACGAC GCGTCCGTGT TCGCCGCGAT GTGCGCCGGC
GCCCGCGGTT ACCTCCTCAA GGGCGCCGAC CAAGACGAAC TGCGCCGGGC TATCACCGCC
GTGGCACACG GCGAGGCAAT CTTCGGCTCC CGTGTCGCGG CACGGGTCCT CGCCCTGCTC
GCCCACCCGC CACGTGAGGT CCCGTTCCCG CAGCTCACCG ACCGCGAGCG GCAGGTTCTG
GACGAACTCG CCCGCGGCCG CAACAATGCA TCGATCGCCC GGGTACTCAA TGTCAGTACC
CGTACCGTCG CCAACCACGT GTCCACGATC TTCGCCAAAC TCCAGCTCGC AGACCGCGCC
GAGGCAATCG TCCGAGCCCG CGAAGCGGGT CTCGGCCACC GCCAGCCGAC CTGA
|
|---|
| Protein sequence | MTDTIKVVVA DDHPLIRAGV RALLLSLDDL DLVGEAADGD EAIRIARATR PDVVLMDLHM
PGTDGVTATR SITAELPDTA VLVVTMVEDD ASVFAAMCAG ARGYLLKGAD QDELRRAITA
VAHGEAIFGS RVAARVLALL AHPPREVPFP QLTDRERQVL DELARGRNNA SIARVLNVST
RTVANHVSTI FAKLQLADRA EAIVRAREAG LGHRQPT
|
|---|
| |