281 homologs were found in PanDaTox collection
for query gene Ndas_2036 on replicon NC_014210
Organism: Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007333  Tfu_1702  sugar-binding protein  74.26 
 
 
442 aa  642    Thermobifida fusca YX  Bacteria  normal  0.981171  n/a   
 
 
-
 
NC_014210  Ndas_2036  extracellular solute-binding protein family 1  100 
 
 
439 aa  885    Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.182591  normal  0.899466 
 
 
-
 
NC_014210  Ndas_1049  extracellular solute-binding protein family 1  72.39 
 
 
437 aa  598  1e-170  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.340866 
 
 
-
 
NC_013530  Xcel_2537  extracellular solute-binding protein family 1  47.47 
 
 
450 aa  403  1e-111  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.272028  n/a   
 
 
-
 
NC_013521  Sked_05230  ABC-type sugar transport system, periplasmic component  44.63 
 
 
450 aa  376  1e-103  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.808581  normal 
 
 
-
 
NC_011886  Achl_3128  extracellular solute-binding protein family 1  42.75 
 
 
450 aa  352  8e-96  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.0477771 
 
 
-
 
NC_008541  Arth_3326  extracellular solute-binding protein  41.98 
 
 
453 aa  350  4e-95  Arthrobacter sp. FB24  Bacteria  decreased coverage  0.00000398294  n/a   
 
 
-
 
NC_011886  Achl_3119  extracellular solute-binding protein family 1  42.47 
 
 
428 aa  345  7e-94  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008541  Arth_0780  extracellular solute-binding protein  41.57 
 
 
436 aa  339  5e-92  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_0895  extracellular solute-binding protein family 1  42.32 
 
 
436 aa  339  5e-92  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.441999 
 
 
-
 
NC_008541  Arth_1126  extracellular solute-binding protein  41.2 
 
 
432 aa  330  4e-89  Arthrobacter sp. FB24  Bacteria  normal  0.190587  n/a   
 
 
-
 
NC_011886  Achl_1199  extracellular solute-binding protein family 1  39.72 
 
 
432 aa  323  3e-87  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000829014 
 
 
-
 
NC_008541  Arth_3329  extracellular solute-binding protein  36.26 
 
 
431 aa  301  2e-80  Arthrobacter sp. FB24  Bacteria  normal  0.0332045  n/a   
 
 
-
 
NC_011886  Achl_3131  extracellular solute-binding protein family 1  38.26 
 
 
422 aa  297  3e-79  Arthrobacter chlorophenolicus A6  Bacteria  n/a    decreased coverage  0.00803878 
 
 
-
 
NC_013172  Bfae_29730  ABC-type sugar transport system, periplasmic component  38.68 
 
 
434 aa  280  4e-74  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_0499  extracellular solute-binding protein family 1  38.32 
 
 
434 aa  276  5e-73  Arthrobacter chlorophenolicus A6  Bacteria  n/a    decreased coverage  0.000057577 
 
 
-
 
NC_012669  Bcav_0793  extracellular solute-binding protein family 1  34.77 
 
 
442 aa  237  3e-61  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.0145438 
 
 
-
 
NC_008541  Arth_3324  extracellular solute-binding protein  32.47 
 
 
427 aa  234  2.0000000000000002e-60  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.000420771  n/a   
 
 
-
 
NC_013172  Bfae_29740  ABC-type sugar transport system, periplasmic component  35.77 
 
 
437 aa  228  1e-58  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3124  extracellular solute-binding protein family 1  29.98 
 
 
429 aa  214  2.9999999999999995e-54  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.0621948 
 
 
-
 
NC_011661  Dtur_0437  extracellular solute-binding protein family 1  29.47 
 
 
424 aa  212  1e-53  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.00000010114  n/a   
 
 
-
 
NC_009636  Smed_3329  extracellular solute-binding protein  31.75 
 
 
428 aa  208  1e-52  Sinorhizobium medicae WSM419  Bacteria  normal  0.955635  normal  0.757839 
 
 
-
 
NC_012034  Athe_2081  extracellular solute-binding protein family 1  30.81 
 
 
434 aa  206  7e-52  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.159947  n/a   
 
 
-
 
NC_011988  Avi_5580  ABC transporter/Periplasmic pectin oligomer binding protein  31.19 
 
 
427 aa  201  9.999999999999999e-51  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3899  extracellular solute-binding protein family 1  32.01 
 
 
435 aa  197  2.0000000000000003e-49  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_4335  extracellular solute-binding protein family 1  28.93 
 
 
428 aa  197  5.000000000000001e-49  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  hitchhiker  0.000444207 
 
 
-
 
NC_011369  Rleg2_4006  extracellular solute-binding protein family 1  29.87 
 
 
428 aa  196  8.000000000000001e-49  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_0897  extracellular solute-binding protein family 1  31.21 
 
 
446 aa  195  1e-48  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0316444  n/a   
 
 
-
 
NC_009620  Smed_3578  extracellular solute-binding protein  30.67 
 
 
428 aa  194  4e-48  Sinorhizobium medicae WSM419  Bacteria  normal  0.608798  normal 
 
 
-
 
NC_012850  Rleg_4344  extracellular solute-binding protein family 1  30.17 
 
 
428 aa  192  1e-47  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0302279  hitchhiker  0.00000351134 
 
 
-
 
NC_012669  Bcav_0919  extracellular solute-binding protein family 1  32.06 
 
 
441 aa  187  4e-46  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_4015  extracellular solute-binding protein family 1  30.05 
 
 
428 aa  186  9e-46  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.946152  normal 
 
 
-
 
NC_013521  Sked_05420  ABC-type sugar transport system, periplasmic component  28.67 
 
 
438 aa  184  2.0000000000000003e-45  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0143899  normal 
 
 
-
 
NC_013093  Amir_0970  extracellular solute-binding protein family 1  29.6 
 
 
428 aa  183  5.0000000000000004e-45  Actinosynnema mirum DSM 43827  Bacteria  normal  0.153801  n/a   
 
 
-
 
NC_013530  Xcel_2647  extracellular solute-binding protein family 1  31.54 
 
 
446 aa  176  9e-43  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.890591  n/a   
 
 
-
 
NC_013521  Sked_03450  ABC-type sugar transport system, periplasmic component  30.57 
 
 
416 aa  174  3.9999999999999995e-42  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.355174 
 
 
-
 
NC_012669  Bcav_1534  extracellular solute-binding protein family 1  30.51 
 
 
436 aa  172  1e-41  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.191711  decreased coverage  0.00957964 
 
 
-
 
NC_009664  Krad_0589  extracellular solute-binding protein family 1  28.74 
 
 
452 aa  171  3e-41  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.289831  normal  0.0417818 
 
 
-
 
NC_012669  Bcav_3557  extracellular solute-binding protein family 1  30.69 
 
 
458 aa  168  1e-40  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0806  extracellular solute-binding protein family 1  28.81 
 
 
437 aa  169  1e-40  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.0510551 
 
 
-
 
NC_013205  Aaci_2460  extracellular solute-binding protein family 1  28.3 
 
 
441 aa  164  2.0000000000000002e-39  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.372805  n/a   
 
 
-
 
NC_010001  Cphy_3402  extracellular solute-binding protein  27.63 
 
 
451 aa  145  2e-33  Clostridium phytofermentans ISDg  Bacteria  unclonable  0.0000000236647  n/a   
 
 
-
 
NC_013517  Sterm_4040  extracellular solute-binding protein family 1  26.26 
 
 
434 aa  144  2e-33  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_2228  extracellular solute-binding protein family 1  26.76 
 
 
460 aa  139  1e-31  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.754729 
 
 
-
 
NC_013517  Sterm_4051  extracellular solute-binding protein family 1  25.64 
 
 
434 aa  138  1e-31  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2197  extracellular solute-binding protein family 1  24.01 
 
 
429 aa  132  1.0000000000000001e-29  Pectobacterium wasabiae WPP163  Bacteria  normal  0.700843  n/a   
 
 
-
 
NC_012917  PC1_1904  extracellular solute-binding protein family 1  24.01 
 
 
429 aa  132  2.0000000000000002e-29  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.172949  n/a   
 
 
-
 
NC_012917  PC1_3369  extracellular solute-binding protein family 1  25.23 
 
 
430 aa  130  4.0000000000000003e-29  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2037  extracellular solute-binding protein family 1  26.93 
 
 
430 aa  130  5.0000000000000004e-29  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_4050  extracellular solute-binding protein family 1  25.29 
 
 
433 aa  129  8.000000000000001e-29  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1688  oligogalacturonide ABC transporter, periplasmic oligogalacturonide-binding protein  26.46 
 
 
430 aa  128  2.0000000000000002e-28  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0550228  n/a   
 
 
-
 
NC_010159  YpAngola_A2648  oligogalacturonide ABC transporter periplasmic oligogalacturonide-binding protein  26.46 
 
 
430 aa  128  2.0000000000000002e-28  Yersinia pestis Angola  Bacteria  normal  0.316005  normal  0.159215 
 
 
-
 
NC_010465  YPK_1798  extracellular solute-binding protein  26.46 
 
 
430 aa  128  2.0000000000000002e-28  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.763472  n/a   
 
 
-
 
NC_013517  Sterm_0697  extracellular solute-binding protein family 1  25.12 
 
 
433 aa  126  6e-28  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3292  extracellular solute-binding protein  27.78 
 
 
428 aa  125  2e-27  Enterobacter sp. 638  Bacteria  normal  normal  0.309737 
 
 
-
 
NC_013517  Sterm_3784  extracellular solute-binding protein family 1  23.95 
 
 
430 aa  120  3.9999999999999996e-26  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2376  extracellular solute-binding protein family 1  24.82 
 
 
438 aa  120  4.9999999999999996e-26  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1966  extracellular solute-binding protein family 1  25.7 
 
 
430 aa  120  4.9999999999999996e-26  Dickeya zeae Ech1591  Bacteria  normal  0.810983  n/a   
 
 
-
 
NC_009654  Mmwyl1_0777  extracellular solute-binding protein  23.31 
 
 
428 aa  120  4.9999999999999996e-26  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_0825  extracellular solute-binding protein family 1  24.93 
 
 
429 aa  114  3e-24  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2102  extracellular solute-binding protein family 1  24.4 
 
 
439 aa  112  1.0000000000000001e-23  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2395  extracellular solute-binding protein family 1  24.4 
 
 
451 aa  110  3e-23  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_2144  extracellular solute-binding protein family 1  25.56 
 
 
432 aa  107  3e-22  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_0558  extracellular solute-binding protein family 1  23.76 
 
 
444 aa  107  4e-22  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_0619  extracellular solute-binding protein  27.16 
 
 
463 aa  99  1e-19  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.0000037115  n/a   
 
 
-
 
NC_008262  CPR_0476  ABC transporter, substrate-binding protein  24.64 
 
 
427 aa  97.8  3e-19  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_4988  extracellular solute-binding protein  24.79 
 
 
414 aa  97.4  4e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  0.601947  normal 
 
 
-
 
NC_013517  Sterm_0719  extracellular solute-binding protein family 1  26.92 
 
 
413 aa  85.1  0.000000000000002  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.0236757  n/a   
 
 
-
 
NC_013525  Tter_0183  extracellular solute-binding protein family 1  27.06 
 
 
429 aa  83.6  0.000000000000007  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009832  Spro_2571  extracellular solute-binding protein  23.24 
 
 
417 aa  81.3  0.00000000000003  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1420  extracellular solute-binding protein  24.44 
 
 
424 aa  78.6  0.0000000000002  Nocardioides sp. JS614  Bacteria  normal  0.979516  n/a   
 
 
-
 
NC_006274  BCZK1634  sugar ABC transporter, sugar-binding protein  21.68 
 
 
416 aa  77.4  0.0000000000005  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1899  extracellular solute-binding protein, putative  21.41 
 
 
416 aa  75.9  0.000000000002  Bacillus cereus ATCC 10987  Bacteria  normal  0.41529  n/a   
 
 
-
 
NC_013131  Caci_7906  extracellular solute-binding protein family 1  24.64 
 
 
420 aa  75.5  0.000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.819994  normal 
 
 
-
 
NC_013172  Bfae_05090  ABC-type sugar transport system, periplasmic component  26.21 
 
 
430 aa  74.3  0.000000000004  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008243  Meso_4520  extracellular solute-binding protein  23.37 
 
 
415 aa  73.2  0.000000000009  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1655  extracellular solute-binding protein family 1  25.66 
 
 
425 aa  72.8  0.00000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.186521  normal  0.186231 
 
 
-
 
NC_013172  Bfae_06270  ABC-type sugar transport system, periplasmic component  24.2 
 
 
426 aa  72.8  0.00000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_03090  ABC-type sugar transport system, periplasmic component  30.46 
 
 
419 aa  72  0.00000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.033461  normal 
 
 
-
 
NC_009664  Krad_2164  extracellular solute-binding protein family 1  22.2 
 
 
435 aa  72  0.00000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_9091  ABC-type sugar transport system periplasmic component-like protein  29.32 
 
 
422 aa  71.6  0.00000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.306335  normal 
 
 
-
 
NC_013172  Bfae_29010  ABC-type sugar transport system, periplasmic component  30.21 
 
 
434 aa  71.2  0.00000000003  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_4688  extracellular solute-binding protein family 1  27.1 
 
 
418 aa  70.9  0.00000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.733472 
 
 
-
 
NC_011661  Dtur_0381  extracellular solute-binding protein family 1  23.86 
 
 
421 aa  70.5  0.00000000005  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_16660  ABC-type sugar transport system, periplasmic component  31.38 
 
 
406 aa  70.5  0.00000000006  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.613471  normal 
 
 
-
 
NC_013205  Aaci_0795  extracellular solute-binding protein family 1  24.87 
 
 
460 aa  67.8  0.0000000004  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.215252  n/a   
 
 
-
 
NC_013521  Sked_01900  ABC-type sugar transport system, periplasmic component  23.48 
 
 
442 aa  67  0.0000000006  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.867357  normal 
 
 
-
 
NC_013521  Sked_02930  carbohydrate-binding protein  23.5 
 
 
426 aa  66.6  0.0000000009  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_0513  extracellular solute-binding protein family 1  25.43 
 
 
447 aa  66.2  0.000000001  Jonesia denitrificans DSM 20603  Bacteria  decreased coverage  0.000000038068  hitchhiker  0.000703825 
 
 
-
 
NC_012852  Rleg_6156  extracellular solute-binding protein family 1  24.09 
 
 
410 aa  65.9  0.000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.889741  hitchhiker  0.000305646 
 
 
-
 
NC_010816  BLD_0192  MalE-type ABC sugar transport system periplasmic component  23.62 
 
 
463 aa  65.9  0.000000001  Bifidobacterium longum DJO10A  Bacteria  normal  0.245721  n/a   
 
 
-
 
NC_013526  Tter_2504  extracellular solute-binding protein family 1  26.77 
 
 
442 aa  65.5  0.000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_4632  extracellular solute-binding protein  24.93 
 
 
419 aa  64.3  0.000000004  Nocardioides sp. JS614  Bacteria  normal  0.448727  n/a   
 
 
-
 
NC_011371  Rleg2_6572  extracellular solute-binding protein family 1  23.73 
 
 
410 aa  64.3  0.000000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.00103217  normal  0.480926 
 
 
-
 
NC_011988  Avi_5398  ABC transporter substrate binding protein (sugar)  25 
 
 
403 aa  63.9  0.000000005  Agrobacterium vitis S4  Bacteria  normal  0.14652  n/a   
 
 
-
 
NC_013411  GYMC61_2731  extracellular solute-binding protein family 1  23.15 
 
 
454 aa  63.5  0.000000007  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_6192  ABC-type sugar transport system periplasmic component-like protein  28.9 
 
 
431 aa  63.5  0.000000007  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0222852  normal 
 
 
-
 
NC_011661  Dtur_0378  extracellular solute-binding protein family 1  25.28 
 
 
420 aa  63.2  0.000000008  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_2683  extracellular solute-binding protein family 1  25.63 
 
 
446 aa  62.4  0.00000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.50155  normal 
 
 
-
 
NC_009620  Smed_4916  extracellular solute-binding protein  23.72 
 
 
410 aa  63.2  0.00000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.06645  normal  0.512511 
 
 
-
 
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