| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3578 |
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| Symbol | |
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| ID | 5318082 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 5353 |
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| End bp | 6639 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640775393 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001312326 |
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| Protein GI | 150375730 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.608798 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTACTCA ACAGACGCGG ATTCATGGCC GGCGCGGCTG GTGCCGCGGC AGGTGTCGCT
CTCGGGTCCC GAACGACCCT CGCGGCCGAA AGCGTGCAGT TGCGCGCCAT GTGGTGGGGA
TCCAACGACC GCTCGAAGCG AACATTGGCA GTCGCCAAGC TTTTCGCGGA AGCCAACCCG
GATATCAGGA TCATCGGCGA AAGCTTGAGC GGCGACGGCT ACTGGACGAA GCTTGCGACC
CAGATGGCCG GTCGGTCCAT TGCCGATATC TTCCAGCTCG AGCCCAGCAC GATCTCGGAT
TACTCCAAGA GGGGCGCCTG CATGGCGCTC GACCCCTTCA TCTCTTCGGC GTTGGACGTC
GACGCATTCG GCAAGGACGT CCTGAAGCTG ACGACGGTGG ATGGAAAGCT CTGGGGTGTG
GGGCTTGGCC TCAATTCTTT CGCGCTGTTC TACGATGCCG ACGCTTTTGC CAGAGCGGGC
ATCGATCCGC CGGGAATTGA CACCACCTGG GCGGAATATG CTGAGATCGC CGTCGAAATG
ACCAAGGCGG TCGGGAAGAA AAGTGCCGGG GGCGGTCCCT ACGGAGCCCG CTACGCCTAT
GTGTTCGATG CCTGGCTCCG TCAGCGAGGA AGCAGCCTCT ATACCGATAG CGGCCTCGGT
TTCGGGGTCG AGGAGGCGAA GGAATGGTAT GCCTATTGGG AAGAGTTGCG CAAGCGCGGC
GGCACCGTCG GAGCGGACAT CCAGACGCTC GACCAGAACA CGATCGACAC CAACTGCCTG
GCGCTCGGCT ATTCGGCGAT GGGCATGGCC TATTCCAACC AGATGGTCGG CTATCAGCTC
ATCATGAAAA GCAAGCTTGG CATCGGCATG CTGCCCCGTG CCGAGAAAGG AGGTCCCTCC
GGCCATTACT ACCGGCCGGC GCTGATCTGG AGCATCGGTG CGTCGACGGA GCACGGCGAA
GAGGCCGCGA AATTCATCAA CTTCTTCGTC AATGACGTGG AGGCCGGCAA GATCCTCGGC
GTGGAGCGCG GCGTGCCCAT GTCGCCGACC GTTCGCGAAG CCATCCTGCC GTCACTCAAC
CCGACCGAAA CGGAAACGGT GAAATATATC AACGGCCTCA AGGATCAGGT GGGGAGCTAT
CCGTCGCCGG CGCCGCTTGG AGCGACCGAG TTCGACCAGC GCGTGCTGCG GCCGATTGCC
GATGAACTCG CCTTCGAGCG GATATCGATC GGAGACGCGG CGACACGGCT GGTGGAGGAA
GGCAGGGCCA CGGTCCGAGC CGGCTGA
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| Protein sequence | MLLNRRGFMA GAAGAAAGVA LGSRTTLAAE SVQLRAMWWG SNDRSKRTLA VAKLFAEANP
DIRIIGESLS GDGYWTKLAT QMAGRSIADI FQLEPSTISD YSKRGACMAL DPFISSALDV
DAFGKDVLKL TTVDGKLWGV GLGLNSFALF YDADAFARAG IDPPGIDTTW AEYAEIAVEM
TKAVGKKSAG GGPYGARYAY VFDAWLRQRG SSLYTDSGLG FGVEEAKEWY AYWEELRKRG
GTVGADIQTL DQNTIDTNCL ALGYSAMGMA YSNQMVGYQL IMKSKLGIGM LPRAEKGGPS
GHYYRPALIW SIGASTEHGE EAAKFINFFV NDVEAGKILG VERGVPMSPT VREAILPSLN
PTETETVKYI NGLKDQVGSY PSPAPLGATE FDQRVLRPIA DELAFERISI GDAATRLVEE
GRATVRAG
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