More than 300 homologs were found in PanDaTox collection
for query gene Smed_3578 on replicon NC_009620
Organism: Sinorhizobium medicae WSM419



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009620  Smed_3578  extracellular solute-binding protein  100 
 
 		 428 aa  868    Sinorhizobium medicae WSM419  Bacteria  normal  0.608798  normal  1 
 
 
-
 
NC_012850  Rleg_4335  extracellular solute-binding protein family 1  73.02 
 
 		 428 aa  632  1e-180  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  hitchhiker  0.000444207 
 
 
-
 
NC_011369  Rleg2_4006  extracellular solute-binding protein family 1  72.33 
 
 		 428 aa  624  1e-177  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009636  Smed_3329  extracellular solute-binding protein  40.81 
 
 		 428 aa  311  2e-83  Sinorhizobium medicae WSM419  Bacteria  normal  0.955635  normal  0.757839 
 
 
-
 
NC_012850  Rleg_4344  extracellular solute-binding protein family 1  39.86 
 
 		 428 aa  291  2e-77  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0302279  hitchhiker  0.00000351134 
 
 
-
 
NC_011369  Rleg2_4015  extracellular solute-binding protein family 1  39.67 
 
 		 428 aa  285  1.0000000000000001e-75  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.946152  normal  1 
 
 
-
 
NC_011988  Avi_5580  ABC transporter/Periplasmic pectin oligomer binding protein  35.83 
 
 		 427 aa  271  2e-71  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_011886  Achl_3128  extracellular solute-binding protein family 1  33.9 
 
 		 450 aa  218  2e-55  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.0477771 
 
 
-
 
NC_008541  Arth_3326  extracellular solute-binding protein  33.5 
 
 		 453 aa  214  1.9999999999999998e-54  Arthrobacter sp. FB24  Bacteria  decreased coverage  0.00000398294  n/a   
 
 
-
 
NC_011661  Dtur_0437  extracellular solute-binding protein family 1  31.2 
 
 		 424 aa  214  1.9999999999999998e-54  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.00000010114  n/a   
 
 
-
 
NC_007333  Tfu_1702  sugar-binding protein  32.67 
 
 		 442 aa  200  3e-50  Thermobifida fusca YX  Bacteria  normal  0.981171  n/a   
 
 
-
 
NC_014210  Ndas_1049  extracellular solute-binding protein family 1  31.84 
 
 		 437 aa  199  9e-50  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  0.340866 
 
 
-
 
NC_011886  Achl_3119  extracellular solute-binding protein family 1  31.83 
 
 		 428 aa  197  2.0000000000000003e-49  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  1 
 
 
-
 
NC_014210  Ndas_2036  extracellular solute-binding protein family 1  30.39 
 
 		 439 aa  196  8.000000000000001e-49  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.182591  normal  0.899466 
 
 
-
 
NC_013172  Bfae_29730  ABC-type sugar transport system, periplasmic component  31.14 
 
 		 434 aa  190  5e-47  Brachybacterium faecium DSM 4810  Bacteria  normal  1  n/a   
 
 
-
 
NC_008541  Arth_3329  extracellular solute-binding protein  29.68 
 
 		 431 aa  190  5e-47  Arthrobacter sp. FB24  Bacteria  normal  0.0332045  n/a   
 
 
-
 
NC_011886  Achl_3131  extracellular solute-binding protein family 1  30.65 
 
 		 422 aa  189  1e-46  Arthrobacter chlorophenolicus A6  Bacteria  n/a    decreased coverage  0.00803878 
 
 
-
 
NC_009664  Krad_0589  extracellular solute-binding protein family 1  30.66 
 
 		 452 aa  179  1e-43  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.289831  normal  0.0417818 
 
 
-
 
NC_013205  Aaci_2460  extracellular solute-binding protein family 1  32.39 
 
 		 441 aa  178  2e-43  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.372805  n/a   
 
 
-
 
NC_011886  Achl_0895  extracellular solute-binding protein family 1  29.97 
 
 		 436 aa  177  5e-43  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.441999 
 
 
-
 
NC_012669  Bcav_0919  extracellular solute-binding protein family 1  29.25 
 
 		 441 aa  175  9.999999999999999e-43  Beutenbergia cavernae DSM 12333  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012034  Athe_2081  extracellular solute-binding protein family 1  30.27 
 
 		 434 aa  174  1.9999999999999998e-42  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.159947  n/a   
 
 
-
 
NC_011886  Achl_0499  extracellular solute-binding protein family 1  30.14 
 
 		 434 aa  173  6.999999999999999e-42  Arthrobacter chlorophenolicus A6  Bacteria  n/a    decreased coverage  0.000057577 
 
 
-
 
NC_008541  Arth_0780  extracellular solute-binding protein  30.58 
 
 		 436 aa  172  1e-41  Arthrobacter sp. FB24  Bacteria  normal  1  n/a   
 
 
-
 
NC_012669  Bcav_3557  extracellular solute-binding protein family 1  31.93 
 
 		 458 aa  170  4e-41  Beutenbergia cavernae DSM 12333  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011886  Achl_3124  extracellular solute-binding protein family 1  29.41 
 
 		 429 aa  170  4e-41  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.0621948 
 
 
-
 
NC_013093  Amir_0970  extracellular solute-binding protein family 1  29.95 
 
 		 428 aa  169  6e-41  Actinosynnema mirum DSM 43827  Bacteria  normal  0.153801  n/a   
 
 
-
 
NC_008541  Arth_1126  extracellular solute-binding protein  31.28 
 
 		 432 aa  169  8e-41  Arthrobacter sp. FB24  Bacteria  normal  0.190587  n/a   
 
 
-
 
NC_013521  Sked_05230  ABC-type sugar transport system, periplasmic component  29.03 
 
 		 450 aa  167  2.9999999999999998e-40  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.808581  normal  1 
 
 
-
 
NC_012669  Bcav_3899  extracellular solute-binding protein family 1  30.1 
 
 		 435 aa  166  6.9999999999999995e-40  Beutenbergia cavernae DSM 12333  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012669  Bcav_0806  extracellular solute-binding protein family 1  28.13 
 
 		 437 aa  165  1.0000000000000001e-39  Beutenbergia cavernae DSM 12333  Bacteria  normal  1  normal  0.0510551 
 
 
-
 
NC_013530  Xcel_2537  extracellular solute-binding protein family 1  30.08 
 
 		 450 aa  164  2.0000000000000002e-39  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.272028  n/a   
 
 
-
 
NC_011886  Achl_1199  extracellular solute-binding protein family 1  30.25 
 
 		 432 aa  164  3e-39  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000829014 
 
 
-
 
NC_012669  Bcav_0793  extracellular solute-binding protein family 1  29.13 
 
 		 442 aa  158  2e-37  Beutenbergia cavernae DSM 12333  Bacteria  normal  1  normal  0.0145438 
 
 
-
 
NC_013521  Sked_03450  ABC-type sugar transport system, periplasmic component  25.32 
 
 		 416 aa  151  2e-35  Sanguibacter keddieii DSM 10542  Bacteria  normal  1  normal  0.355174 
 
 
-
 
NC_008541  Arth_3324  extracellular solute-binding protein  26.48 
 
 		 427 aa  150  5e-35  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.000420771  n/a   
 
 
-
 
NC_010001  Cphy_3402  extracellular solute-binding protein  30.89 
 
 		 451 aa  145  2e-33  Clostridium phytofermentans ISDg  Bacteria  unclonable  0.0000000236647  n/a   
 
 
-
 
NC_013521  Sked_05420  ABC-type sugar transport system, periplasmic component  25.06 
 
 		 438 aa  144  4e-33  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0143899  normal  1 
 
 
-
 
NC_013517  Sterm_4050  extracellular solute-binding protein family 1  29.25 
 
 		 433 aa  137  5e-31  Sebaldella termitidis ATCC 33386  Bacteria  normal  1  n/a   
 
 
-
 
NC_012669  Bcav_1534  extracellular solute-binding protein family 1  28.08 
 
 		 436 aa  135  9.999999999999999e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.191711  decreased coverage  0.00957964 
 
 
-
 
NC_013530  Xcel_0897  extracellular solute-binding protein family 1  26.16 
 
 		 446 aa  132  1.0000000000000001e-29  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0316444  n/a   
 
 
-
 
NC_013172  Bfae_29740  ABC-type sugar transport system, periplasmic component  26.95 
 
 		 437 aa  130  4.0000000000000003e-29  Brachybacterium faecium DSM 4810  Bacteria  normal  1  n/a   
 
 
-
 
NC_013517  Sterm_0697  extracellular solute-binding protein family 1  26.24 
 
 		 433 aa  128  2.0000000000000002e-28  Sebaldella termitidis ATCC 33386  Bacteria  normal  1  n/a   
 
 
-
 
NC_013421  Pecwa_2197  extracellular solute-binding protein family 1  27.01 
 
 		 429 aa  124  2e-27  Pectobacterium wasabiae WPP163  Bacteria  normal  0.700843  n/a   
 
 
-
 
NC_013517  Sterm_4051  extracellular solute-binding protein family 1  26.27 
 
 		 434 aa  124  3e-27  Sebaldella termitidis ATCC 33386  Bacteria  normal  1  n/a   
 
 
-
 
NC_012917  PC1_1904  extracellular solute-binding protein family 1  26.39 
 
 		 429 aa  123  5e-27  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.172949  n/a   
 
 
-
 
NC_012912  Dd1591_1966  extracellular solute-binding protein family 1  26.39 
 
 		 430 aa  120  3.9999999999999996e-26  Dickeya zeae Ech1591  Bacteria  normal  0.810983  n/a   
 
 
-
 
NC_012917  PC1_3369  extracellular solute-binding protein family 1  24.79 
 
 		 430 aa  120  4.9999999999999996e-26  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_012034  Athe_2376  extracellular solute-binding protein family 1  27.68 
 
 		 438 aa  119  9.999999999999999e-26  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_012880  Dd703_2037  extracellular solute-binding protein family 1  25.58 
 
 		 430 aa  119  9.999999999999999e-26  Dickeya dadantii Ech703  Bacteria  normal  1  n/a   
 
 
-
 
NC_013530  Xcel_2647  extracellular solute-binding protein family 1  26.29 
 
 		 446 aa  118  1.9999999999999998e-25  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.890591  n/a   
 
 
-
 
NC_013517  Sterm_3784  extracellular solute-binding protein family 1  28.78 
 
 		 430 aa  117  5e-25  Sebaldella termitidis ATCC 33386  Bacteria  normal  1  n/a   
 
 
-
 
NC_013517  Sterm_4040  extracellular solute-binding protein family 1  28.03 
 
 		 434 aa  115  1.0000000000000001e-24  Sebaldella termitidis ATCC 33386  Bacteria  normal  1  n/a   
 
 
-
 
NC_009708  YpsIP31758_1688  oligogalacturonide ABC transporter, periplasmic oligogalacturonide-binding protein  26.59 
 
 		 430 aa  115  1.0000000000000001e-24  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0550228  n/a   
 
 
-
 
NC_010159  YpAngola_A2648  oligogalacturonide ABC transporter periplasmic oligogalacturonide-binding protein  26.59 
 
 		 430 aa  115  1.0000000000000001e-24  Yersinia pestis Angola  Bacteria  normal  0.316005  normal  0.159215 
 
 
-
 
NC_010465  YPK_1798  extracellular solute-binding protein  26.59 
 
 		 430 aa  115  1.0000000000000001e-24  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.763472  n/a   
 
 
-
 
NC_014210  Ndas_0558  extracellular solute-binding protein family 1  25.29 
 
 		 444 aa  115  2.0000000000000002e-24  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009654  Mmwyl1_0777  extracellular solute-binding protein  25.36 
 
 		 428 aa  114  4.0000000000000004e-24  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009436  Ent638_3292  extracellular solute-binding protein  26.27 
 
 		 428 aa  113  8.000000000000001e-24  Enterobacter sp. 638  Bacteria  normal  1  normal  0.309737 
 
 
-
 
NC_009664  Krad_2228  extracellular solute-binding protein family 1  25.23 
 
 		 460 aa  111  3e-23  Kineococcus radiotolerans SRS30216  Bacteria  normal  1  normal  0.754729 
 
 
-
 
NC_009664  Krad_2144  extracellular solute-binding protein family 1  25.31 
 
 		 432 aa  110  4.0000000000000004e-23  Kineococcus radiotolerans SRS30216  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012912  Dd1591_0825  extracellular solute-binding protein family 1  24.86 
 
 		 429 aa  106  9e-22  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
NC_012917  PC1_2102  extracellular solute-binding protein family 1  24.65 
 
 		 439 aa  90.5  6e-17  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011661  Dtur_0381  extracellular solute-binding protein family 1  27.24 
 
 		 421 aa  88.2  2e-16  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_010320  Teth514_2201  extracellular solute-binding protein  28.94 
 
 		 420 aa  85.1  0.000000000000002  Thermoanaerobacter sp. X514  Bacteria  normal  0.455559  n/a   
 
 
-
 
NC_008262  CPR_0476  ABC transporter, substrate-binding protein  27.05 
 
 		 427 aa  83.6  0.000000000000006  Clostridium perfringens SM101  Bacteria  normal  1  n/a   
 
 
-
 
NC_013525  Tter_0829  extracellular solute-binding protein family 1  29.52 
 
 		 504 aa  83.2  0.000000000000008  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009832  Spro_2571  extracellular solute-binding protein  24.93 
 
 		 417 aa  81.6  0.00000000000002  Serratia proteamaculans 568  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013526  Tter_2504  extracellular solute-binding protein family 1  21.38 
 
 		 442 aa  80.9  0.00000000000005  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  1  n/a   
 
 
-
 
NC_008699  Noca_4632  extracellular solute-binding protein  28.01 
 
 		 419 aa  79.7  0.00000000000009  Nocardioides sp. JS614  Bacteria  normal  0.448727  n/a   
 
 
-
 
NC_013411  GYMC61_2731  extracellular solute-binding protein family 1  25.29 
 
 		 454 aa  78.6  0.0000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013421  Pecwa_2395  extracellular solute-binding protein family 1  31.03 
 
 		 451 aa  77.8  0.0000000000003  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_0619  extracellular solute-binding protein  25.71 
 
 		 463 aa  75.9  0.000000000001  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.0000037115  n/a   
 
 
-
 
NC_013411  GYMC61_1727  extracellular solute-binding protein family 1  27.84 
 
 		 422 aa  75.5  0.000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_014212  Mesil_2466  extracellular solute-binding protein family 1  29.76 
 
 		 415 aa  75.1  0.000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  0.0930087 
 
 
-
 
NC_013517  Sterm_0719  extracellular solute-binding protein family 1  24.43 
 
 		 413 aa  74.3  0.000000000004  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.0236757  n/a   
 
 
-
 
NC_009664  Krad_2164  extracellular solute-binding protein family 1  25.96 
 
 		 435 aa  70.9  0.00000000004  Kineococcus radiotolerans SRS30216  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013205  Aaci_0795  extracellular solute-binding protein family 1  26.46 
 
 		 460 aa  70.5  0.00000000005  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.215252  n/a   
 
 
-
 
NC_013526  Tter_2315  extracellular solute-binding protein family 1  28.82 
 
 		 503 aa  68.9  0.0000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  1  n/a   
 
 
-
 
NC_003909  BCE_1899  extracellular solute-binding protein, putative  24.07 
 
 		 416 aa  68.6  0.0000000002  Bacillus cereus ATCC 10987  Bacteria  normal  0.41529  n/a   
 
 
-
 
NC_006274  BCZK1634  sugar ABC transporter, sugar-binding protein  24.07 
 
 		 416 aa  68.2  0.0000000002  Bacillus cereus E33L  Bacteria  normal  1  n/a   
 
 
-
 
NC_012850  Rleg_3430  extracellular solute-binding protein family 1  25.35 
 
 		 415 aa  68.2  0.0000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012669  Bcav_1454  extracellular solute-binding protein family 1  33.82 
 
 		 445 aa  68.2  0.0000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.71759  normal  1 
 
 
-
 
NC_011899  Hore_20630  extracellular solute-binding protein family 1  29.52 
 
 		 414 aa  68.2  0.0000000003  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_6584  ABC transporter sugar binding protein  25.21 
 
 		 437 aa  67  0.0000000007  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_4988  extracellular solute-binding protein  25.15 
 
 		 414 aa  66.6  0.0000000009  Streptosporangium roseum DSM 43021  Bacteria  normal  0.601947  normal  1 
 
 
-
 
NC_013172  Bfae_29010  ABC-type sugar transport system, periplasmic component  28.29 
 
 		 434 aa  65.9  0.000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  1  n/a   
 
 
-
 
NC_009767  Rcas_2546  extracellular solute-binding protein  24.92 
 
 		 488 aa  65.9  0.000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.39868  normal  0.139719 
 
 
-
 
NC_013526  Tter_2218  extracellular solute-binding protein family 1  23.55 
 
 		 479 aa  66.2  0.000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00910899  n/a   
 
 
-
 
NC_009523  RoseRS_2818  extracellular solute-binding protein  26.94 
 
 		 488 aa  65.5  0.000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.179577  normal  1 
 
 
-
 
NC_011831  Cagg_2267  extracellular solute-binding protein family 1  23.84 
 
 		 445 aa  65.1  0.000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  hitchhiker  0.00064551 
 
 
-
 
NC_007413  Ava_3042  extracellular solute-binding protein  26.2 
 
 		 406 aa  64.7  0.000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0658677  normal  1 
 
 
-
 
NC_013205  Aaci_0913  extracellular solute-binding protein family 1  28.39 
 
 		 421 aa  64.7  0.000000003  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  1  n/a   
 
 
-
 
NC_009939  Dgeo_2919  ABC-type sugar transport system, periplasmic component  25.86 
 
 		 407 aa  64.7  0.000000003  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_013525  Tter_0508  extracellular solute-binding protein family 1  21.69 
 
 		 514 aa  64.3  0.000000004  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009620  Smed_4916  extracellular solute-binding protein  24.63 
 
 		 410 aa  64.3  0.000000004  Sinorhizobium medicae WSM419  Bacteria  normal  0.06645  normal  0.512511 
 
 
-
 
NC_013595  Sros_2364  ABC-type sugar transport system periplasmic component-like protein  28.01 
 
 		 416 aa  64.3  0.000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128582  normal  1 
 
 
-
 
NC_013946  Mrub_0045  extracellular solute-binding protein family 1  26.94 
 
 		 414 aa  63.5  0.000000006  Meiothermus ruber DSM 1279  Bacteria  normal  0.713374  normal  1 
 
 
-
 
NC_013739  Cwoe_2936  extracellular solute-binding protein family 1  32.41 
 
 		 447 aa  63.5  0.000000007  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  0.322365 
 
 
-
 
NC_009616  Tmel_0690  extracellular solute-binding protein  27.65 
 
 		 402 aa  63.5  0.000000007  Thermosipho melanesiensis BI429  Bacteria  normal  0.678935  n/a   
 
 
-
 
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