Gene Avi_5580 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5580 
SymboltogB 
ID7381484 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand
Start bp591125 
End bp592408 
Gene Length1284 bp 
Protein Length427 aa 
Translation table11 
GC content57% 
IMG OID643649156 
ProductABC transporter/Periplasmic pectin oligomer binding protein 
Protein accessionYP_002547393 
Protein GI222106602 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGACAA AATTCAGCAG ACGAACCGTG CTTGCTGGCA TGGGTCTGAC GATGCCGTTG 
ATCTGCATGG GTGCAGTTGG CGCAAGAGCG GCCACCAACC TGCGGTTTTT GTGGTGGGGC
TCCAAGGAGC GCAACGACCG AACCTTCAAG GTCATCGAAG CCTATAAGGC CAAGAACAGC
GGCACAGCCA TTGATGGCGA GTCTTTTGGC TGGGACAATT ACTGGACACG TCTGGCCACC
CAGACGGCGG GCGGCAATGC ACCCGACCTG ATCCAGATGG ATTACCGTTA TATTTTTGAA
TATGCGCGGC GCGGTACGCT GCTTGATCTG ACGCCCTATA TGGGAAAAAC GCTGAAAATC
GACGATTTCG GCGCCGCTAA TATCGATGCC GGCAAGGTTG GCGGCAAGCT CTACGGCGTC
AATCTCGGCG TCAATTCCGT CACGGCACTC GTCAACAAGG CGGCGTGGCA GGAAACCGGC
GTTGACGCGC TGCACGAGGG CATGACTTGG GAGGAATTCG GCGAGGCCTG CGCTAAGGTC
TCTGCCGCCA AGAAGCGCCG TGGTTTTTAT GGTACGCAGG ACGGCAGCGT CGGCGAAAGC
AATCTGGAAT GCTGGCTGCG TCAGCGCGGC AAGGCGCTGT ATACGGCGGA TGGCACCATT
GGTTTCGACC AGGGCGATAT AACCGAATGG TTCAAATTCT GGGCCTGGAT GCGTAAGATC
AAGGCCTGCG TGCCAGCCGA TATCCAGGCG CTCGACCAGC TCAATGTCGA AAACAATATG
GTGACATTGA ACAAGGCGGC CGTTGGCTTC GTCAATTCAA ATCAGTTCAT CGCCTTCCAG
GCTGTCAACA AGGACCCGTT GACGCTGATG AGCTATCCCG AAACCAAGGG TGGCAAGCCT
GGGCATTATC TGAAGCCCTC TATGCTGATT TCGGTCTCCG CCGCATCCGC CAACAAGGAT
GCTGCTGTCA ATTTCGTCAA TTTCCTGGTC GAAGACAAGG ATGCGGCGCT GGCGCTCGGG
ATCGAGCGTG GTATTCCGGC ATCGACGACC ATGCGCGAGG CCCTGGAGCC GACGCTGAAC
GATCAGTCCA AGGAAATTCT TGACTATATC GCCCGGCTGA CGCCGCATGT CGGTCCGCTT
CCGCCGCCGC CGCCAAATGG CGCGGGTGAA AACCAGATGT TGATCAAGAA GATCGGCGAA
GAAGTCGGCT TTGGGCGACT TTCGCCGGAA GACGGCGCGG CGAAATTCGT CGATCAGGCG
GCTGCCAATC TGAAACGGGG TTGA
 
Protein sequence
MMTKFSRRTV LAGMGLTMPL ICMGAVGARA ATNLRFLWWG SKERNDRTFK VIEAYKAKNS 
GTAIDGESFG WDNYWTRLAT QTAGGNAPDL IQMDYRYIFE YARRGTLLDL TPYMGKTLKI
DDFGAANIDA GKVGGKLYGV NLGVNSVTAL VNKAAWQETG VDALHEGMTW EEFGEACAKV
SAAKKRRGFY GTQDGSVGES NLECWLRQRG KALYTADGTI GFDQGDITEW FKFWAWMRKI
KACVPADIQA LDQLNVENNM VTLNKAAVGF VNSNQFIAFQ AVNKDPLTLM SYPETKGGKP
GHYLKPSMLI SVSAASANKD AAVNFVNFLV EDKDAALALG IERGIPASTT MREALEPTLN
DQSKEILDYI ARLTPHVGPL PPPPPNGAGE NQMLIKKIGE EVGFGRLSPE DGAAKFVDQA
AANLKRG