More than 300 homologs were found in PanDaTox collection
for query gene Sde_3000 on replicon NC_007912
Organism: Saccharophagus degradans 2-40



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007912  Sde_3000  response regulator receiver domain-containing protein  100 
 
 
229 aa  470  1e-132  Saccharophagus degradans 2-40  Bacteria  normal  hitchhiker  0.000248508 
 
 
-
 
NC_007912  Sde_3733  response regulator receiver domain-containing protein  48.55 
 
 
249 aa  223  2e-57  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.766169 
 
 
-
 
NC_013132  Cpin_0374  two component transcriptional regulator, LytTR family  42.42 
 
 
242 aa  196  3e-49  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_5142  two component transcriptional regulator, LytTR family  44.44 
 
 
244 aa  195  5.000000000000001e-49  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.546377  normal 
 
 
-
 
NC_013730  Slin_2906  two component transcriptional regulator, LytTR family  42.13 
 
 
245 aa  178  4.999999999999999e-44  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_0617  two component transcriptional regulator, LytTR family  34.06 
 
 
243 aa  173  1.9999999999999998e-42  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.23864 
 
 
-
 
NC_010571  Oter_1527  LytTR family two component transcriptional regulator  36.86 
 
 
246 aa  165  5.9999999999999996e-40  Opitutus terrae PB90-1  Bacteria  normal  0.109257  normal 
 
 
-
 
NC_008228  Patl_2385  response regulator receiver protein  32.43 
 
 
272 aa  140  1.9999999999999998e-32  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_4846  LytTR family two component transcriptional regulator  34.2 
 
 
246 aa  137  1e-31  Shewanella woodyi ATCC 51908  Bacteria  normal  0.568582  normal 
 
 
-
 
NC_010571  Oter_0704  LytTR family two component transcriptional regulator  31.8 
 
 
276 aa  134  8e-31  Opitutus terrae PB90-1  Bacteria  normal  normal  0.674394 
 
 
-
 
NC_009441  Fjoh_5028  LytTR family two component transcriptional regulator  35.53 
 
 
237 aa  133  1.9999999999999998e-30  Flavobacterium johnsoniae UW101  Bacteria  normal  0.967214  n/a   
 
 
-
 
NC_013061  Phep_1542  LytTr DNA-binding region  34.18 
 
 
245 aa  131  6.999999999999999e-30  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.300206 
 
 
-
 
NC_013132  Cpin_6586  two component transcriptional regulator, LytTR family  31.78 
 
 
246 aa  129  4.0000000000000003e-29  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.318104  normal 
 
 
-
 
NC_008228  Patl_1151  response regulator receiver protein  32.69 
 
 
276 aa  129  5.0000000000000004e-29  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0469  response regulator receiver protein  35.25 
 
 
254 aa  127  1.0000000000000001e-28  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_4524  two component transcriptional regulator, LytTR family  31.53 
 
 
240 aa  125  6e-28  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.00000306542  normal  0.871136 
 
 
-
 
NC_008009  Acid345_3838  LytR/AlgR family transcriptional regulator  32.05 
 
 
254 aa  124  2e-27  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.479778 
 
 
-
 
NC_013132  Cpin_1844  two component transcriptional regulator, LytTR family  32.39 
 
 
236 aa  123  2e-27  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_0979  LytTR family two component transcriptional regulator  32.21 
 
 
242 aa  124  2e-27  Opitutus terrae PB90-1  Bacteria  normal  normal  0.0238694 
 
 
-
 
NC_007912  Sde_3900  response regulator receiver domain-containing protein  31.65 
 
 
261 aa  121  9.999999999999999e-27  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_4801  two component transcriptional regulator, LytTR family  33.48 
 
 
240 aa  120  1.9999999999999998e-26  Haliangium ochraceum DSM 14365  Bacteria  normal  0.154299  normal 
 
 
-
 
NC_013501  Rmar_1860  two component transcriptional regulator, LytTR family  32 
 
 
266 aa  120  1.9999999999999998e-26  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0067  LytTR family two component transcriptional regulator  30.71 
 
 
268 aa  120  1.9999999999999998e-26  Opitutus terrae PB90-1  Bacteria  normal  0.169577  normal  0.169612 
 
 
-
 
NC_008009  Acid345_3487  LytR/AlgR family transcriptional regulator  30.38 
 
 
253 aa  119  3e-26  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.76921  normal 
 
 
-
 
NC_013132  Cpin_7298  two component transcriptional regulator, LytTR family  38.38 
 
 
230 aa  119  3e-26  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_1585  LytTr DNA-binding region  36.13 
 
 
259 aa  119  3.9999999999999996e-26  Pedobacter heparinus DSM 2366  Bacteria  normal  0.80455  normal  0.0356965 
 
 
-
 
NC_013132  Cpin_5734  two component transcriptional regulator, LytTR family  33.82 
 
 
257 aa  119  3.9999999999999996e-26  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_3291  LytR/AlgR family transcriptional regulator  29.48 
 
 
258 aa  119  4.9999999999999996e-26  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.393667  normal 
 
 
-
 
NC_013037  Dfer_0764  two component transcriptional regulator, LytTR family  35.78 
 
 
245 aa  119  4.9999999999999996e-26  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.626213 
 
 
-
 
NC_013132  Cpin_6623  two component transcriptional regulator, LytTR family  33.91 
 
 
258 aa  118  9e-26  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0991065  normal  0.080317 
 
 
-
 
NC_013216  Dtox_3773  two component transcriptional regulator, LytTR family  33.06 
 
 
260 aa  118  9e-26  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.10961  normal 
 
 
-
 
NC_013730  Slin_4710  two component transcriptional regulator, LytTR family  32.55 
 
 
254 aa  117  9.999999999999999e-26  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_01918  putative response regulator in two-component regulatory system  30.98 
 
 
275 aa  118  9.999999999999999e-26  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.159199  n/a   
 
 
-
 
NC_009997  Sbal195_1695  putative two-component response-regulatory protein YehT  35.78 
 
 
236 aa  117  1.9999999999999998e-25  Shewanella baltica OS195  Bacteria  decreased coverage  0.00000884824  normal 
 
 
-
 
NC_009665  Shew185_1658  putative two-component response-regulatory protein YehT  35.78 
 
 
236 aa  117  1.9999999999999998e-25  Shewanella baltica OS185  Bacteria  hitchhiker  0.00000000153786  n/a   
 
 
-
 
NC_013385  Adeg_1761  two component transcriptional regulator, LytTR family  34.58 
 
 
251 aa  117  1.9999999999999998e-25  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_1673  putative two-component response-regulatory protein YehT  35.78 
 
 
236 aa  117  1.9999999999999998e-25  Shewanella baltica OS155  Bacteria  hitchhiker  0.00000537167  n/a   
 
 
-
 
NC_011663  Sbal223_2685  putative two-component response-regulatory protein YehT  35.78 
 
 
236 aa  117  1.9999999999999998e-25  Shewanella baltica OS223  Bacteria  normal  0.0538398  hitchhiker  0.000367908 
 
 
-
 
NC_013093  Amir_5278  two component transcriptional regulator, LytTR family  33.06 
 
 
281 aa  116  3e-25  Actinosynnema mirum DSM 43827  Bacteria  normal  0.415246  n/a   
 
 
-
 
NC_011094  SeSA_A2397  putative two-component response-regulatory protein YehT  33.91 
 
 
239 aa  116  3.9999999999999997e-25  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.423362  normal 
 
 
-
 
NC_011080  SNSL254_A2348  putative two-component response-regulatory protein YehT  33.91 
 
 
239 aa  116  3.9999999999999997e-25  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A2505  putative two-component response-regulatory protein YehT  33.91 
 
 
239 aa  116  3.9999999999999997e-25  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_2723  putative two-component response-regulatory protein YehT  33.91 
 
 
239 aa  115  3.9999999999999997e-25  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B2304  putative two-component response-regulatory protein YehT  33.91 
 
 
239 aa  116  3.9999999999999997e-25  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C2393  putative two-component response-regulatory protein YehT  33.91 
 
 
239 aa  116  3.9999999999999997e-25  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_0420  LytR/AlgR family transcriptional regulator  33.77 
 
 
317 aa  115  5e-25  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0328897  normal  0.0302219 
 
 
-
 
NC_009441  Fjoh_3968  LytTR family two component transcriptional regulator  34.62 
 
 
229 aa  115  6e-25  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0978404  n/a   
 
 
-
 
NC_010658  SbBS512_E0865  putative two-component response-regulatory protein YehT  34.19 
 
 
239 aa  115  7.999999999999999e-25  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_3628  two component transcriptional regulator, LytTR family  33.33 
 
 
235 aa  115  7.999999999999999e-25  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.0184746 
 
 
-
 
NC_013730  Slin_0826  two component transcriptional regulator, LytTR family  35.33 
 
 
235 aa  114  1.0000000000000001e-24  Spirosoma linguale DSM 74  Bacteria  normal  0.398179  normal 
 
 
-
 
NC_007644  Moth_2172  LytR/AlgR family transcriptional regulator  34.02 
 
 
252 aa  114  1.0000000000000001e-24  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0721488  normal  0.0255714 
 
 
-
 
NC_013132  Cpin_4010  two component transcriptional regulator, LytTR family  35.62 
 
 
231 aa  114  1.0000000000000001e-24  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0569074  decreased coverage  0.00157623 
 
 
-
 
NC_013061  Phep_4189  LytTr DNA-binding region  33.8 
 
 
231 aa  114  1.0000000000000001e-24  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.537023 
 
 
-
 
NC_009457  VC0395_A0224  putative two-component response-regulatory protein YehT  36.44 
 
 
237 aa  114  1.0000000000000001e-24  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_0488  response regulator receiver protein  29 
 
 
252 aa  114  1.0000000000000001e-24  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0480  response regulator receiver domain-containing protein  31.4 
 
 
265 aa  114  2.0000000000000002e-24  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_3544  two component transcriptional regulator, LytTR family  32.35 
 
 
251 aa  113  3e-24  Geobacter lovleyi SZ  Bacteria  normal  0.0394969  n/a   
 
 
-
 
CP001509  ECD_02054  predicted response regulator in two-component system withYehU  33.76 
 
 
239 aa  112  4.0000000000000004e-24  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1533  two component transcriptional regulator, LytTR family  33.76 
 
 
239 aa  112  4.0000000000000004e-24  Escherichia coli DH1  Bacteria  normal  0.726215  n/a   
 
 
-
 
NC_011353  ECH74115_3112  putative two-component response-regulatory protein YehT  33.76 
 
 
239 aa  112  4.0000000000000004e-24  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.148941 
 
 
-
 
NC_012892  B21_02012  hypothetical protein  33.76 
 
 
239 aa  112  4.0000000000000004e-24  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2413  putative two-component response-regulatory protein YehT  33.76 
 
 
239 aa  112  4.0000000000000004e-24  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2259  putative two-component response-regulatory protein YehT  33.76 
 
 
239 aa  112  4.0000000000000004e-24  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1522  putative two-component response-regulatory protein YehT  33.76 
 
 
239 aa  112  4.0000000000000004e-24  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_2883  putative two-component response-regulatory protein YehT  33.05 
 
 
236 aa  112  4.0000000000000004e-24  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000903631  unclonable  0.0000000000401288 
 
 
-
 
NC_008228  Patl_1149  response regulator receiver protein  30.67 
 
 
239 aa  112  5e-24  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_3594  two component transcriptional regulator, LytTR family  34.45 
 
 
260 aa  112  5e-24  Spirosoma linguale DSM 74  Bacteria  normal  0.833136  normal  0.0457058 
 
 
-
 
NC_009441  Fjoh_4134  LytTR family two component transcriptional regulator  36.74 
 
 
243 aa  112  5e-24  Flavobacterium johnsoniae UW101  Bacteria  normal  0.291369  n/a   
 
 
-
 
NC_008255  CHU_2575  two-component response regulator  38.81 
 
 
241 aa  112  6e-24  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_1281  putative two-component response-regulatory protein YehT  36.09 
 
 
236 aa  112  6e-24  Shewanella amazonensis SB2B  Bacteria  normal  0.155887  normal  0.0159688 
 
 
-
 
NC_010571  Oter_2329  LytTR family two component transcriptional regulator  29.41 
 
 
255 aa  112  6e-24  Opitutus terrae PB90-1  Bacteria  normal  0.0531557  decreased coverage  0.00207881 
 
 
-
 
NC_010498  EcSMS35_0919  putative two-component response-regulatory protein YehT  33.76 
 
 
239 aa  112  6e-24  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_3358  putative two-component response-regulatory protein YehT  32.63 
 
 
238 aa  111  8.000000000000001e-24  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3485  putative two-component response-regulatory protein YehT  32.63 
 
 
238 aa  111  8.000000000000001e-24  Yersinia pestis Angola  Bacteria  normal  normal  0.159726 
 
 
-
 
NC_003910  CPS_2278  LytTr DNA-binding response regulator  30.34 
 
 
280 aa  111  9e-24  Colwellia psychrerythraea 34H  Bacteria  normal  0.421967  n/a   
 
 
-
 
NC_013132  Cpin_3396  two component transcriptional regulator, LytTR family  35.64 
 
 
243 aa  111  9e-24  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.655263 
 
 
-
 
NC_013132  Cpin_5230  two component transcriptional regulator, LytTR family  31.78 
 
 
244 aa  111  9e-24  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.236835  normal  0.031416 
 
 
-
 
NC_013132  Cpin_5598  two component transcriptional regulator, LytTR family  35.64 
 
 
237 aa  111  9e-24  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.0000105391  normal 
 
 
-
 
NC_010424  Daud_0119  response regulator receiver protein  32.19 
 
 
249 aa  111  1.0000000000000001e-23  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_0137  two component transcriptional regulator, LytTR family  32.62 
 
 
237 aa  110  1.0000000000000001e-23  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_0161  LytR/AlgR family transcriptional regulator  28 
 
 
270 aa  111  1.0000000000000001e-23  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1964  LytR/AlgR family transcriptional regulator  33.98 
 
 
255 aa  111  1.0000000000000001e-23  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.777054 
 
 
-
 
NC_009675  Anae109_3416  putative two-component response-regulatory protein YehT  31.33 
 
 
237 aa  110  1.0000000000000001e-23  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.329348  normal  0.0577965 
 
 
-
 
NC_009708  YpsIP31758_3221  putative two-component response-regulatory protein YehT  32.63 
 
 
238 aa  111  1.0000000000000001e-23  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_01160  response regulator of the LytR/AlgR family  33.62 
 
 
238 aa  110  1.0000000000000001e-23  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_3159  response regulator receiver  29.87 
 
 
242 aa  110  1.0000000000000001e-23  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2060  two component transcriptional regulator, LytTR family  30.46 
 
 
240 aa  111  1.0000000000000001e-23  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_2328  LytTR family two component transcriptional regulator  28.69 
 
 
255 aa  110  2.0000000000000002e-23  Opitutus terrae PB90-1  Bacteria  normal  0.261765  decreased coverage  0.00199939 
 
 
-
 
NC_004116  SAG1016  response regulator  32.2 
 
 
244 aa  110  2.0000000000000002e-23  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1765  putative two-component response-regulatory protein YehT  34.63 
 
 
232 aa  110  2.0000000000000002e-23  Shewanella woodyi ATCC 51908  Bacteria  normal  0.199181  hitchhiker  0.00544661 
 
 
-
 
NC_013037  Dfer_0733  two component transcriptional regulator, LytTR family  35.78 
 
 
243 aa  109  3e-23  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2093  putative two-component response-regulatory protein YehT  33.33 
 
 
237 aa  109  3e-23  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4564  LytTR family two component transcriptional regulator  30.81 
 
 
233 aa  109  4.0000000000000004e-23  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0221995  n/a   
 
 
-
 
NC_009511  Swit_4495  LytTR family two component transcriptional regulator  30.66 
 
 
245 aa  109  4.0000000000000004e-23  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.17015 
 
 
-
 
NC_013037  Dfer_5303  two component transcriptional regulator, LytTR family  31.88 
 
 
261 aa  109  4.0000000000000004e-23  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.153649 
 
 
-
 
NC_008321  Shewmr4_2432  putative two-component response-regulatory protein YehT  34.76 
 
 
236 aa  109  4.0000000000000004e-23  Shewanella sp. MR-4  Bacteria  decreased coverage  0.0000158974  hitchhiker  0.00361478 
 
 
-
 
NC_013132  Cpin_5383  two component transcriptional regulator, LytTR family  30.61 
 
 
235 aa  108  5e-23  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_3668  two-component response regulator AlgR  31.8 
 
 
243 aa  108  5e-23  Saccharophagus degradans 2-40  Bacteria  decreased coverage  0.00827536  normal  0.334671 
 
 
-
 
NC_013061  Phep_0217  LytTr DNA-binding region  31.7 
 
 
250 aa  108  5e-23  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.630653 
 
 
-
 
NC_009438  Sputcn32_1548  putative two-component response-regulatory protein YehT  33.04 
 
 
236 aa  108  5e-23  Shewanella putrefaciens CN-32  Bacteria  normal  0.496368  n/a   
 
 
-
 
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