| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4495 |
|---|
| Symbol | |
|---|
| ID | 5198917 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 4938569 |
|---|
| End bp | 4939306 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640584048 |
|---|
| Product | LytTR family two component transcriptional regulator |
|---|
| Protein accession | YP_001264971 |
|---|
| Protein GI | 148557389 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.17015 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTCTG ATTCACCGAT AAGAACCCTC GTCGTCGACG ATGAGCCGCT CGCTATCGAA
CGTCTCCAGA TCCTGTGCGC GCGCGAGCCG ATGATCGACC TGGTCGGCAC CGCTTCCGAC
GGCGAGGCGG CGCTACGGCT GATCGAGGCG CTCCAGCCCG AGATGCTGCT GCTCGACATC
GCCATGCCGG GACTGGACGG GATCGGCGTC GCCAAGGCGA TCGAGAAGGC CGAGCAGCGC
CCGGCGATCA TCTTCTGCAC CGCCTTCGAC CAATATGCGG TGACGGCGTT CGACCTGTCG
GCGACCGACT ATCTGCTGAA GCCGGTCGCG CAGGACCGGC TGGCGCGCGC GGTCTCGCGC
GTGGTCGAGC GGCGGCGCGA GCCGGCCGAC GAGCGGCCGG CATCCGAATA TGCGCAGGAA
TTCTGGGTGC CGCACCGGTC GGAGATGATC CGGGTGGCGG CGCAGGACAT CGACCGGATC
GAGGCGGAGC GCGACTATAT GCGCCTGCAC CTGGGCCAGC GCAGCTTCCT GCTGCACCAG
ACGATCACCG AGCTCGAACG GCGGCTCGAC CCGGCCAACT TCATCCGCCT GCACCGATCG
ACGATCGTCC GGCGCGACCG CATCGCCCGG CTGAGCCATG ACGGCATGGG CGTCTGGCAT
GCGGTCCTGA CCGACGAGGA ACGCATCCGC ATCGGCCGGA CCTACCTGCC CGCCGCCCGC
GCCCTGATGG GGCGCTGA
|
|---|
| Protein sequence | MTSDSPIRTL VVDDEPLAIE RLQILCAREP MIDLVGTASD GEAALRLIEA LQPEMLLLDI
AMPGLDGIGV AKAIEKAEQR PAIIFCTAFD QYAVTAFDLS ATDYLLKPVA QDRLARAVSR
VVERRREPAD ERPASEYAQE FWVPHRSEMI RVAAQDIDRI EAERDYMRLH LGQRSFLLHQ
TITELERRLD PANFIRLHRS TIVRRDRIAR LSHDGMGVWH AVLTDEERIR IGRTYLPAAR
ALMGR
|
|---|
| |