Gene Cpin_5598 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_5598 
Symbol 
ID8361775 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp7147275 
End bp7147988 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content47% 
IMG OID644967741 
Producttwo component transcriptional regulator, LytTR family 
Protein accessionYP_003125225 
Protein GI256424572 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3279] Response regulator of the LytR/AlgR family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000105391 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTTTAA GATGCATAGC CGTCGACGAC GAACCACTCG CGCTTGACCT CCTCGAAGAC 
AATATCCGCC AGGTACCTTT CCTTGAAATG GTGGCCAAAT GTGCGGACGC CTTCGAAGCT
ATCAAAGTAT TACAGGAAAC CACCGTTGAT CTGATCTTCC TCGATATACA GATGCCCGGA
CTGACCGGCC TGCAATTCAT ACAGAGCCTG GCCCATAAAC CGATGATCAT CCTTATTACT
GCTTACGAAA AATATGCACT GGAAGGATTT GAACTGGATG TTACCGATTA CCTGGTAAAA
CCCGTCAGCC TGCCCCGCTT TATCAAAGCA TGTAATAAAG CCAGAGAACT GCATCAGCTC
AAACATCAGC AGCTGACCGC CGCTCCGGGT ACCACACCTG AGTTTTTCTT CGTGAATTCA
GATTATAGTC TGCTGAAGAT CAATGTGGCC GATATCATCT GGATAGAAGC CTTAAAAGAC
TACATCAGGA TCCATCTGAC CGGCACCGCC AAACCTGTAG TGACACGCAT GCCACTGAAA
CAGGTAGAAG AACAGCTGCC ACCGGCCAGA TTCATCCGTA TTCATAAATC TTATATCATC
GCAGTTGCCC ACATCACGGC CATTCGTAAA AACAGCGTTT TTATCGGTAC TATGGAATTG
CCTGTAGGTG ATAACTACCG GGAAGCTGTA GCAGCGCTGA CAGGTACTAA ATAG
 
Protein sequence
MTLRCIAVDD EPLALDLLED NIRQVPFLEM VAKCADAFEA IKVLQETTVD LIFLDIQMPG 
LTGLQFIQSL AHKPMIILIT AYEKYALEGF ELDVTDYLVK PVSLPRFIKA CNKARELHQL
KHQQLTAAPG TTPEFFFVNS DYSLLKINVA DIIWIEALKD YIRIHLTGTA KPVVTRMPLK
QVEEQLPPAR FIRIHKSYII AVAHITAIRK NSVFIGTMEL PVGDNYREAV AALTGTK