Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_5598 |
Symbol | |
ID | 8361775 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 7147275 |
End bp | 7147988 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644967741 |
Product | two component transcriptional regulator, LytTR family |
Protein accession | YP_003125225 |
Protein GI | 256424572 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3279] Response regulator of the LytR/AlgR family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000105391 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTTTAA GATGCATAGC CGTCGACGAC GAACCACTCG CGCTTGACCT CCTCGAAGAC AATATCCGCC AGGTACCTTT CCTTGAAATG GTGGCCAAAT GTGCGGACGC CTTCGAAGCT ATCAAAGTAT TACAGGAAAC CACCGTTGAT CTGATCTTCC TCGATATACA GATGCCCGGA CTGACCGGCC TGCAATTCAT ACAGAGCCTG GCCCATAAAC CGATGATCAT CCTTATTACT GCTTACGAAA AATATGCACT GGAAGGATTT GAACTGGATG TTACCGATTA CCTGGTAAAA CCCGTCAGCC TGCCCCGCTT TATCAAAGCA TGTAATAAAG CCAGAGAACT GCATCAGCTC AAACATCAGC AGCTGACCGC CGCTCCGGGT ACCACACCTG AGTTTTTCTT CGTGAATTCA GATTATAGTC TGCTGAAGAT CAATGTGGCC GATATCATCT GGATAGAAGC CTTAAAAGAC TACATCAGGA TCCATCTGAC CGGCACCGCC AAACCTGTAG TGACACGCAT GCCACTGAAA CAGGTAGAAG AACAGCTGCC ACCGGCCAGA TTCATCCGTA TTCATAAATC TTATATCATC GCAGTTGCCC ACATCACGGC CATTCGTAAA AACAGCGTTT TTATCGGTAC TATGGAATTG CCTGTAGGTG ATAACTACCG GGAAGCTGTA GCAGCGCTGA CAGGTACTAA ATAG
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Protein sequence | MTLRCIAVDD EPLALDLLED NIRQVPFLEM VAKCADAFEA IKVLQETTVD LIFLDIQMPG LTGLQFIQSL AHKPMIILIT AYEKYALEGF ELDVTDYLVK PVSLPRFIKA CNKARELHQL KHQQLTAAPG TTPEFFFVNS DYSLLKINVA DIIWIEALKD YIRIHLTGTA KPVVTRMPLK QVEEQLPPAR FIRIHKSYII AVAHITAIRK NSVFIGTMEL PVGDNYREAV AALTGTK
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