| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3000 |
|---|
| Symbol | |
|---|
| ID | 3967761 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 3824724 |
|---|
| End bp | 3825413 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637922097 |
|---|
| Product | response regulator receiver domain-containing protein |
|---|
| Protein accession | YP_528469 |
|---|
| Protein GI | 90022642 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.000248508 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGGCGCGCG AAGGCTTAGC ACGCATGCTT AGCGATTACC CCGCTATTAA TGTTGTTGGC
AAAGCCGCAG ATGCCCACGA GGCCAAAGTA TTAATAGAGG CGACCAAACC CGATGTGTTA
TTTTTAGATA TACACATGCC CGGCAAAACA GGGTTAGAGC TTTTAGAAGA GCTCGACGAG
CTGCCAAAAA TAATATTTAC CACCGCCTAT TCTGAATATG CAATTAAATC TTTCGAGTAC
CCAACGATAG ATTATTTACT AAAACCCATT AGCCAAGAGC GGCTAGCAGT GGCAGTAAAT
AAGCTGCTTA GTGATGATAC GCTTACACAG CAGGTGCAAC CGCCAGCAAG AAAGCTTGAG
CTAAATAGCA AAATATTTAT AAAAGACGGC GAAGCTTGCC ATTTGGTGGC GCTGAACGAT
ATTTACTACA TTGAAAGCTG TAAGAATTAT GTGCGCGCGT TTTTCGCTAA CAAAAAAGCA
TTTGTACGCA AAAACATGAC CCAAATAGAA GAGGTGCTGC CAAGTGAAAT ATTTTTTAGG
GCGAGCAGGC AAGGCATTAT TAACTTAAAC CATATACAAA ATATAGAGGC ATCGGTGGGC
GACGGCTACG AAGTAACCCT CACCAACGGC GTTGTTGCCG AAGTGTCGCG CAGAAACGCG
GCAAGGTTAA AGGAGATGTT GAGTTTCTAG
|
|---|
| Protein sequence | MAREGLARML SDYPAINVVG KAADAHEAKV LIEATKPDVL FLDIHMPGKT GLELLEELDE
LPKIIFTTAY SEYAIKSFEY PTIDYLLKPI SQERLAVAVN KLLSDDTLTQ QVQPPARKLE
LNSKIFIKDG EACHLVALND IYYIESCKNY VRAFFANKKA FVRKNMTQIE EVLPSEIFFR
ASRQGIINLN HIQNIEASVG DGYEVTLTNG VVAEVSRRNA ARLKEMLSF
|
|---|
| |