More than 300 homologs were found in PanDaTox collection
for query gene Sden_2955 on replicon NC_007954
Organism: Shewanella denitrificans OS217



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007954  Sden_2955  chemotaxis sensory transducer  100 
 
 
497 aa  984    Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_2733  methyl-accepting chemotaxis protein  40 
 
 
485 aa  282  1e-74  Colwellia psychrerythraea 34H  Bacteria  normal  0.501844  n/a   
 
 
-
 
NC_013456  VEA_003896  methyl-accepting chemotaxis protein  41.46 
 
 
545 aa  252  1e-65  Vibrio sp. Ex25  Bacteria  decreased coverage  0.000288698  n/a   
 
 
-
 
NC_009783  VIBHAR_01753  hypothetical protein  42.82 
 
 
545 aa  246  4.9999999999999997e-64  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  42.33 
 
 
559 aa  241  2e-62  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2650  methyl-accepting chemotaxis sensory transducer  37.93 
 
 
568 aa  239  1e-61  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  40.52 
 
 
548 aa  236  5.0000000000000005e-61  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  42.53 
 
 
712 aa  236  8e-61  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_009439  Pmen_2000  methyl-accepting chemotaxis sensory transducer  42.61 
 
 
560 aa  234  2.0000000000000002e-60  Pseudomonas mendocina ymp  Bacteria  normal  0.0144557  normal  0.0324669 
 
 
-
 
NC_008463  PA14_29800  putative chemotaxis transducer  44.34 
 
 
561 aa  233  8.000000000000001e-60  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.00431462  normal 
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  42.24 
 
 
712 aa  233  8.000000000000001e-60  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  38.5 
 
 
713 aa  232  1e-59  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_011312  VSAL_I2130  methyl-accepting chemotaxis protein  41.41 
 
 
546 aa  231  2e-59  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.665531  n/a   
 
 
-
 
NC_009656  PSPA7_2548  putative chemotaxis transducer  43.73 
 
 
561 aa  231  3e-59  Pseudomonas aeruginosa PA7  Bacteria  normal  0.271227  n/a   
 
 
-
 
NC_007492  Pfl01_0354  chemotaxis sensory transducer, Cache sensor  39.66 
 
 
630 aa  231  3e-59  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_3768  chemotaxis sensory transducer  42.56 
 
 
560 aa  231  3e-59  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  42.43 
 
 
716 aa  231  3e-59  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_003910  CPS_3864  methyl-accepting chemotaxis protein  41.62 
 
 
568 aa  230  4e-59  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000971  methyl-accepting chemotaxis protein  40.23 
 
 
553 aa  230  4e-59  Vibrio sp. Ex25  Bacteria  normal  0.370017  n/a   
 
 
-
 
NC_008345  Sfri_2212  methyl-accepting chemotaxis sensory transducer  42.14 
 
 
549 aa  230  4e-59  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_55960  chemotactic transducer PctC  35.27 
 
 
632 aa  229  8e-59  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.289325  normal 
 
 
-
 
NC_009656  PSPA7_4877  chemotactic transducer PctB  36.48 
 
 
629 aa  228  1e-58  Pseudomonas aeruginosa PA7  Bacteria  normal  0.164155  n/a   
 
 
-
 
NC_009831  Ssed_3256  methyl-accepting chemotaxis protein  39.44 
 
 
558 aa  229  1e-58  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  37.6 
 
 
637 aa  228  2e-58  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  43.53 
 
 
564 aa  228  2e-58  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0391  methyl-accepting chemotaxis sensory transducer  35.25 
 
 
499 aa  227  3e-58  Saccharophagus degradans 2-40  Bacteria  normal  0.0811848  normal 
 
 
-
 
NC_008463  PA14_56010  chemotactic transducer PctB  35.76 
 
 
629 aa  227  3e-58  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0581  methyl-accepting chemotaxis sensory transducer  37.7 
 
 
554 aa  226  6e-58  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  41.88 
 
 
552 aa  226  7e-58  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_008321  Shewmr4_2937  methyl-accepting chemotaxis sensory transducer  32.53 
 
 
495 aa  226  9e-58  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000865197  normal  0.384283 
 
 
-
 
NC_009901  Spea_3491  methyl-accepting chemotaxis sensory transducer with Cache sensor  42.9 
 
 
626 aa  226  9e-58  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  38.58 
 
 
638 aa  226  9e-58  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_009092  Shew_2119  methyl-accepting chemotaxis sensory transducer  41.11 
 
 
548 aa  225  1e-57  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4874  chemotactic transducer PctC  35.03 
 
 
632 aa  226  1e-57  Pseudomonas aeruginosa PA7  Bacteria  normal  0.153332  n/a   
 
 
-
 
NC_009784  VIBHAR_07022  histidine kinase  41.49 
 
 
553 aa  224  2e-57  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008322  Shewmr7_3019  methyl-accepting chemotaxis sensory transducer  32.53 
 
 
495 aa  224  2e-57  Shewanella sp. MR-7  Bacteria  decreased coverage  0.00108184  normal 
 
 
-
 
NC_008577  Shewana3_3116  methyl-accepting chemotaxis sensory transducer  32.47 
 
 
495 aa  225  2e-57  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00299178  normal 
 
 
-
 
NC_008700  Sama_2327  putative methyl-accepting chemotaxis sensory transducer  40 
 
 
554 aa  225  2e-57  Shewanella amazonensis SB2B  Bacteria  normal  0.644098  normal  0.637343 
 
 
-
 
NC_009438  Sputcn32_0619  methyl-accepting chemotaxis sensory transducer  38.6 
 
 
634 aa  224  3e-57  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  41.07 
 
 
637 aa  224  3e-57  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_009439  Pmen_3309  methyl-accepting chemotaxis sensory transducer  40.79 
 
 
625 aa  224  4e-57  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.776822 
 
 
-
 
NC_009901  Spea_3492  methyl-accepting chemotaxis sensory transducer with Cache sensor  39.63 
 
 
626 aa  223  7e-57  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3200  methyl-accepting chemotaxis sensory transducer  40.27 
 
 
554 aa  223  8e-57  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0851  methyl-accepting chemotaxis sensory transducer  40.11 
 
 
674 aa  223  9e-57  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.244273  n/a   
 
 
-
 
NC_009831  Ssed_3532  methyl-accepting chemotaxis sensory transducer  40.06 
 
 
555 aa  222  9.999999999999999e-57  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_1723  methyl-accepting chemotaxis sensory transducer with Cache sensor  40.95 
 
 
626 aa  222  9.999999999999999e-57  Pseudomonas putida W619  Bacteria  normal  0.372844  normal 
 
 
-
 
NC_009831  Ssed_3502  methyl-accepting chemotaxis sensory transducer  40.63 
 
 
620 aa  222  9.999999999999999e-57  Shewanella sediminis HAW-EB3  Bacteria  normal  0.666992  normal  0.2901 
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  41.95 
 
 
636 aa  222  9.999999999999999e-57  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_009901  Spea_4196  methyl-accepting chemotaxis sensory transducer  40.48 
 
 
552 aa  221  1.9999999999999999e-56  Shewanella pealeana ATCC 700345  Bacteria  normal  0.14959  n/a   
 
 
-
 
NC_008321  Shewmr4_0924  methyl-accepting chemotaxis sensory transducer  39 
 
 
543 aa  221  1.9999999999999999e-56  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_001822  methyl-accepting chemotaxis protein  38.71 
 
 
557 aa  221  1.9999999999999999e-56  Vibrio sp. Ex25  Bacteria  unclonable  0.00000124429  n/a   
 
 
-
 
NC_008577  Shewana3_3299  methyl-accepting chemotaxis sensory transducer  38.31 
 
 
554 aa  221  1.9999999999999999e-56  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_0942  putative methyl-accepting chemotaxis sensory transducer  34.95 
 
 
495 aa  221  1.9999999999999999e-56  Shewanella amazonensis SB2B  Bacteria  decreased coverage  0.000202207  normal 
 
 
-
 
NC_008322  Shewmr7_0959  methyl-accepting chemotaxis sensory transducer  39 
 
 
543 aa  221  3e-56  Shewanella sp. MR-7  Bacteria  normal  0.656726  normal  0.666936 
 
 
-
 
NC_008577  Shewana3_0923  methyl-accepting chemotaxis sensory transducer  39 
 
 
543 aa  221  3e-56  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3199  methyl-accepting chemotaxis sensory transducer  38.06 
 
 
554 aa  220  3.9999999999999997e-56  Shewanella sp. MR-7  Bacteria  normal  normal  0.927661 
 
 
-
 
NC_010501  PputW619_0425  methyl-accepting chemotaxis sensory transducer with Cache sensor  37.12 
 
 
630 aa  219  6e-56  Pseudomonas putida W619  Bacteria  normal  0.461628  normal 
 
 
-
 
NC_004347  SO_4053  methyl-accepting chemotaxis protein  39.66 
 
 
634 aa  220  6e-56  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013457  VEA_001073  N-acetylglucosamine regulated methyl-accepting chemotaxis protein  38.42 
 
 
628 aa  219  6e-56  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003139  methyl-accepting chemotaxis protein  41.34 
 
 
627 aa  219  7e-56  Vibrio sp. Ex25  Bacteria  normal  0.116124  n/a   
 
 
-
 
NC_009092  Shew_2954  methyl-accepting chemotaxis sensory transducer  40.57 
 
 
620 aa  219  8.999999999999998e-56  Shewanella loihica PV-4  Bacteria  decreased coverage  0.000679912  normal 
 
 
-
 
NC_008577  Shewana3_3611  methyl-accepting chemotaxis sensory transducer  37.31 
 
 
634 aa  219  8.999999999999998e-56  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_1310  methyl-accepting chemotaxis sensory transducer  31.19 
 
 
497 aa  219  1e-55  Shewanella woodyi ATCC 51908  Bacteria  normal  0.615607  normal 
 
 
-
 
NC_013889  TK90_1029  methyl-accepting chemotaxis sensory transducer  40.63 
 
 
411 aa  218  2e-55  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_0339  methyl-accepting chemotaxis sensory transducer  40.18 
 
 
558 aa  218  2e-55  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3455  methyl-accepting chemotaxis sensory transducer  38.22 
 
 
543 aa  218  2e-55  Shewanella baltica OS185  Bacteria  normal  0.0121993  n/a   
 
 
-
 
NC_009997  Sbal195_3579  methyl-accepting chemotaxis sensory transducer  38.22 
 
 
543 aa  218  2e-55  Shewanella baltica OS195  Bacteria  normal  normal  0.0986947 
 
 
-
 
NC_011663  Sbal223_3382  methyl-accepting chemotaxis sensory transducer  38.22 
 
 
543 aa  218  2e-55  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_01884  hypothetical protein  41.87 
 
 
627 aa  218  2.9999999999999998e-55  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008789  Hhal_0167  methyl-accepting chemotaxis sensory transducer  36.36 
 
 
540 aa  218  2.9999999999999998e-55  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_0824  methyl-accepting chemotaxis sensory transducer  38.06 
 
 
554 aa  217  2.9999999999999998e-55  Shewanella sp. MR-4  Bacteria  normal  hitchhiker  0.00067966 
 
 
-
 
NC_009052  Sbal_0908  methyl-accepting chemotaxis sensory transducer  38.22 
 
 
543 aa  217  2.9999999999999998e-55  Shewanella baltica OS155  Bacteria  normal  0.073872  n/a   
 
 
-
 
NC_008321  Shewmr4_3323  methyl-accepting chemotaxis sensory transducer  43.14 
 
 
554 aa  217  2.9999999999999998e-55  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3491  methyl-accepting chemotaxis sensory transducer  43.14 
 
 
554 aa  217  2.9999999999999998e-55  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  37.67 
 
 
541 aa  217  4e-55  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_008321  Shewmr4_1767  methyl-accepting chemotaxis sensory transducer  36.96 
 
 
545 aa  216  8e-55  Shewanella sp. MR-4  Bacteria  normal  0.381763  normal 
 
 
-
 
NC_008322  Shewmr7_0630  methyl-accepting chemotaxis sensory transducer  42.86 
 
 
554 aa  216  8e-55  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3169  methyl-accepting chemotaxis sensory transducer  40.82 
 
 
620 aa  216  9e-55  Shewanella pealeana ATCC 700345  Bacteria  normal  0.225635  n/a   
 
 
-
 
NC_008322  Shewmr7_1845  methyl-accepting chemotaxis sensory transducer  36.96 
 
 
545 aa  216  9e-55  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2220  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  40.49 
 
 
646 aa  215  9.999999999999999e-55  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.071358  normal  0.520396 
 
 
-
 
NC_009831  Ssed_0837  methyl-accepting chemotaxis sensory transducer  38.86 
 
 
554 aa  216  9.999999999999999e-55  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_00119  methyl-accepting chemotaxis protein  39.6 
 
 
626 aa  215  1.9999999999999998e-54  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_1142  methyl-accepting chemotaxis sensory transducer  31.94 
 
 
495 aa  215  1.9999999999999998e-54  Shewanella baltica OS185  Bacteria  normal  0.0413666  n/a   
 
 
-
 
NC_009654  Mmwyl1_1586  methyl-accepting chemotaxis sensory transducer  41.16 
 
 
626 aa  214  1.9999999999999998e-54  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_2254  methyl-accepting chemotaxis sensory transducer  37.67 
 
 
545 aa  214  1.9999999999999998e-54  Shewanella sp. ANA-3  Bacteria  normal  normal  0.492 
 
 
-
 
NC_009512  Pput_3489  methyl-accepting chemotaxis sensory transducer  38.57 
 
 
628 aa  214  2.9999999999999995e-54  Pseudomonas putida F1  Bacteria  normal  0.228387  normal 
 
 
-
 
NC_010322  PputGB1_1880  methyl-accepting chemotaxis sensory transducer with Cache sensor  37.63 
 
 
628 aa  214  2.9999999999999995e-54  Pseudomonas putida GB-1  Bacteria  normal  0.454316  normal 
 
 
-
 
NC_008463  PA14_26280  putative chemotaxis transducer  38.87 
 
 
545 aa  214  2.9999999999999995e-54  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.917899 
 
 
-
 
NC_009052  Sbal_0870  methyl-accepting chemotaxis sensory transducer  38.22 
 
 
554 aa  214  2.9999999999999995e-54  Shewanella baltica OS155  Bacteria  normal  0.0571565  n/a   
 
 
-
 
NC_009997  Sbal195_3617  methyl-accepting chemotaxis sensory transducer  38.22 
 
 
554 aa  213  3.9999999999999995e-54  Shewanella baltica OS195  Bacteria  normal  normal  0.964358 
 
 
-
 
NC_007005  Psyr_2246  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  41.27 
 
 
629 aa  214  3.9999999999999995e-54  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.265681  normal  0.412954 
 
 
-
 
NC_009656  PSPA7_4876  chemotactic transducer PctA  34.67 
 
 
629 aa  214  3.9999999999999995e-54  Pseudomonas aeruginosa PA7  Bacteria  normal  0.647167  n/a   
 
 
-
 
NC_009665  Shew185_3494  methyl-accepting chemotaxis sensory transducer  37.82 
 
 
554 aa  213  3.9999999999999995e-54  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3759  methyl-accepting chemotaxis sensory transducer  41 
 
 
554 aa  213  4.9999999999999996e-54  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0990388  normal 
 
 
-
 
NC_009456  VC0395_0173  methyl-accepting chemotaxis protein  40.45 
 
 
639 aa  213  4.9999999999999996e-54  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_56000  chemotactic transducer PctA  38.59 
 
 
629 aa  213  4.9999999999999996e-54  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0512673  normal 
 
 
-
 
NC_011663  Sbal223_3422  methyl-accepting chemotaxis sensory transducer with Cache sensor  37.82 
 
 
554 aa  213  4.9999999999999996e-54  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2480  methyl-accepting chemotaxis protein  41.07 
 
 
629 aa  213  5.999999999999999e-54  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0925  methyl-accepting chemotaxis sensory transducer  40.51 
 
 
543 aa  213  5.999999999999999e-54  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1176  methyl-accepting chemotaxis sensory transducer  31.39 
 
 
495 aa  213  5.999999999999999e-54  Shewanella baltica OS195  Bacteria  hitchhiker  0.00652986  normal 
 
 
-
 
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