| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3532 |
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| Symbol | |
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| ID | 5612062 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4303122 |
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| End bp | 4304789 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640934485 |
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| Product | methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_001475264 |
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| Protein GI | 157376664 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAACT CCAGTTTACG TAATAAATTA TTACTTCTTG CTTTGAACCC ATTTTTAATT
TCAATTTCAC TTCTTATTTC TGTTTCCTAT GTCTTCGAAC AGGCCTCGCT CGAAGACGAT
GTTGTCACTT TTAGGACTCA GTTAATTGAT GAAAGAAAAA ATCATATTAA AGAAGCAACC
GAAATTGCTG CCGGGATAGT GGCTTATCAA TTATCCCTAA AACCTCTAGG TGATGTTAAC
CAGGCATTAC GCAATATTCG TTTTGGCAAT GCAGGTTACT TCTACATCTA TGACTCCAAT
GGTAAAAATA TTGTCCACGG TTTAAAATCT GAGTATGAAG GGAAAAATAA AATAGGTTTG
ACAGACTCAA GAGGTACAAA AATTCTTGTA GGCTTGCTCG ATGCAGCTAA AAACGGTGAC
GGTAATTACT CCTACTTTTA TCAAAAGCCT GGCTCTAGCC AGGAAATCGA GAAAATTGGC
TTTACTATGA TGCTTCCTAA TACCGACTGG ATGATAGGAA CAGGTGTTTA TATTGATGAT
ATAGATAATG TAGTAGCCAA TTATAAAGCC ACATCAACTA ACCAGATGAA AGATAAATCT
ATTGGGATAT TGATAATTGC ATTTTTGCTA ACCGGCACAA CCTCATTATT TGTTATATTT
ACTGCACAAC ACATAGTCGT GCCGATTAAA AATATGGCAG CTAACTTAAA CGACATAGCT
AAGGGCGAGG GGGACTTGAC CCGACGCTTG AATATTAAAG GTGAAGATGA AATCGCTCAG
CTTGGGCGTT CATTTAACCT GTTTGTTGGC AAGTTGCAGC ATATTATTGG TGATGTCGCC
TCTGCTACAG GAAAAGTGAG ACTGGCTGCT AAAAATATCA GCGAGCAGAC TAAGGTTATG
TCGGGTAAGT TGATAAACCA TAACAGTGAA ACAGACCAGG TAGTAACGGC GATGAGCGAG
ATGTCGGCTA CAGCAAATGA AGTGGCCCAG AACACCTCCT TAGTGGCCGA TGCAACCCAT
GCTGCTACCA GTGATGTCAC CAAGGCACAA GGGTGTGTTG ATAGCTCTTT AACCGAGGTC
TCGTCCTTAA TGATGCAAAT TGACAACGCA GCAATCAACG TAAAATCTTT GAGTGAGCAA
TCACATAAGA TCGACTCAGT CCTAACTGTT ATTGGCAGTA TTGCCGAACA AACAAATCTT
TTGGCTTTAA ATGCGGCTAT CGAAGCGGCG CGGGCCGGAG AACAGGGCCG CGGTTTTGCA
GTGGTTGCCG ATGAGGTGCG TAACTTAGCC AGTCGCACTC AGGCCAGTAC TCTGGAGATC
AACGAAATGC TATCTAAGCT ACACACCTCA GTCTCCCAAG CGGTTAAGAG CATGGACGAT
AGTCAGCAAA GCTGTATCCG CTCGGTGGAT TCTTCACGGG CGATATCGGA CAGTCTAGGG
GCGGTGACTT CGGCAGTAAC TTCGATCAAC GACATGAGTA CTCAAATTGC CACTGCTGCT
ACAGAGCAAA GTTCGGTTAC TGAAGAGATA AACCGTAACG TCTTTGCGAT AAAAGATATA
GTGAGCGATC TACTTCACTC CAGTGAAGAT GCCGACAAAG TAAGCCAAAC AGTATCTCTG
GAAGGAGGTA ATTTGAGCAA GTTGGTGGGA CAATTTAAGA TTTCATAA
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| Protein sequence | MFNSSLRNKL LLLALNPFLI SISLLISVSY VFEQASLEDD VVTFRTQLID ERKNHIKEAT
EIAAGIVAYQ LSLKPLGDVN QALRNIRFGN AGYFYIYDSN GKNIVHGLKS EYEGKNKIGL
TDSRGTKILV GLLDAAKNGD GNYSYFYQKP GSSQEIEKIG FTMMLPNTDW MIGTGVYIDD
IDNVVANYKA TSTNQMKDKS IGILIIAFLL TGTTSLFVIF TAQHIVVPIK NMAANLNDIA
KGEGDLTRRL NIKGEDEIAQ LGRSFNLFVG KLQHIIGDVA SATGKVRLAA KNISEQTKVM
SGKLINHNSE TDQVVTAMSE MSATANEVAQ NTSLVADATH AATSDVTKAQ GCVDSSLTEV
SSLMMQIDNA AINVKSLSEQ SHKIDSVLTV IGSIAEQTNL LALNAAIEAA RAGEQGRGFA
VVADEVRNLA SRTQASTLEI NEMLSKLHTS VSQAVKSMDD SQQSCIRSVD SSRAISDSLG
AVTSAVTSIN DMSTQIATAA TEQSSVTEEI NRNVFAIKDI VSDLLHSSED ADKVSQTVSL
EGGNLSKLVG QFKIS
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