| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3759 |
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| Symbol | |
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| ID | 5612658 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4580243 |
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| End bp | 4581907 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934713 |
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| Product | methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_001475491 |
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| Protein GI | 157376891 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0990388 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAATA TGAGTTTGAA GAATAAACTG CTGTTATTTG CCCTTTTACC AGTGGCGGTG
ATCTTTTTTA GCTTAATGGC TATTACCTAT AACATTGAGT CGAATAACCT CGAAAAAAAT
GTGTCATCTT TCAAAGAGAA GTTAATTGAA GACCGAAAGG CGGTGTTAAA AGAGGAGATT
GAAATTGCTG TTCAGATCGT TGTCTACCAA CAGTCATTGG GTGAGCAAGG AGATGTAAAA
GCGGCGCTAA GACAGGTGCG ATTTGGCCAG TCAGGCTATT TCTTCATCTA TGATGAGCAA
GGGGTCAATA TTTTCCATGG TGCCAGCTCC GAAAGAGAGG GGAATAATTA CATTGGAATG
ACAGATCCCA ATGGGAAGAG AGTCATTGTA GGTTTGCTTA ATGCCGCAAA AACAGGGGAT
GGTACCTTCA ATTATCATCA TGATAAACCG GGCACTAGTG GCCTGGTTGA GAAAATTAGC
TACAGTGAGA TGATTCCTGG CAGCGATTGG ATAATAGGAA CCGGGGCTTA CGTTGATGAT
ATCGAAAGTG AGGTTCGCGA CTATCGGGAC ATCACCACTC AGCATATGCA AGATAAGGCG
ATAACTGTCT TGGTTATTGT ACTTATTCTT GTTTTATTAA CCACGATAGC GGTGTTATAT
ATTGCCCAGC GAATGGTCCG TCCAATAAGA AACATGGTGA CCAATTTAGA AGATATTGCC
AAAGGTGAGG GAGACCTGAC TAAGCGACTG GATGTTGAGG GCAGTGATGA GATAGCGCAG
CTCGGACTTG CCTTTAACCT GTTTGTCGAA AAATTGCAGG GAATCATTAA GGATGTCAGT
AATGTCACTT TGGAGGTCAA GAGTGGTGCA GCTGATATTA ACAACCAGAC GCTGACGATG
GGCGAGCAAC TGGTGAATCA TAATAATGAG ACTGATCAGG TGGTCACCGC TATCACTGAG
ATGTCGGCAA CTGCGAGTGA GGTGGCACAA AATACGTCAC AGGTTGCCGA GGCGACGCTC
GCCGCAACGG GTGATGTCAA TACGGCTCAG GAGTGCGTCG ATACTTCATT AACCGAAGTG
TCATCATTAA TGGCCGAAAT AGACACCGCT GCGGAGCATA TTAATTCACT GAGTGAGCAA
TCTAAAAAAA TTAACAGCGT ATTGACCGTA ATTGGCGGCA TTGCCGAGCA AACCAACCTG
TTGGCATTAA ATGCAGCCAT TGAAGCGGCC AGGGCGGGTG AGCAGGGCCG AGGCTTCGCC
GTCGTTGCCG ATGAGGTACG TAGTTTAGCC AGCAGGACTC AGGCCAGTAC CTTAGAGATT
AATGAGATGC TCACTGAGCT TCATAACCTG GTATCACTGG CTGTGAGCAC CATGGATTCG
AGCCAGAAAG GTTGTTTGCG CTCGGTTGAG TCCTCCAGAG CAATCTCTGA GAGCCTAGGT
GCGGTAACGT CTGCGGTAAC ATCGATTAAT GATATGAGTA CACAAATCGC CACGGCGGCA
ACCGAGCAAA GCTCAGTGAC CGAAGAGATT AACCGTAACG TCTTTGCGAT TCAGGATATT
GTCAATGAGT TGATGAGTTC GAGCCAAAAC ACTTCAGGAG TGAGCCAAAA GCTGGCTCAG
GAGGGGGACA GCCTCGGCGA GTTGGTTGGA CAGTTTAAGG TCTAG
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| Protein sequence | MMNMSLKNKL LLFALLPVAV IFFSLMAITY NIESNNLEKN VSSFKEKLIE DRKAVLKEEI
EIAVQIVVYQ QSLGEQGDVK AALRQVRFGQ SGYFFIYDEQ GVNIFHGASS EREGNNYIGM
TDPNGKRVIV GLLNAAKTGD GTFNYHHDKP GTSGLVEKIS YSEMIPGSDW IIGTGAYVDD
IESEVRDYRD ITTQHMQDKA ITVLVIVLIL VLLTTIAVLY IAQRMVRPIR NMVTNLEDIA
KGEGDLTKRL DVEGSDEIAQ LGLAFNLFVE KLQGIIKDVS NVTLEVKSGA ADINNQTLTM
GEQLVNHNNE TDQVVTAITE MSATASEVAQ NTSQVAEATL AATGDVNTAQ ECVDTSLTEV
SSLMAEIDTA AEHINSLSEQ SKKINSVLTV IGGIAEQTNL LALNAAIEAA RAGEQGRGFA
VVADEVRSLA SRTQASTLEI NEMLTELHNL VSLAVSTMDS SQKGCLRSVE SSRAISESLG
AVTSAVTSIN DMSTQIATAA TEQSSVTEEI NRNVFAIQDI VNELMSSSQN TSGVSQKLAQ
EGDSLGELVG QFKV
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