Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3759 |
Symbol | |
ID | 5612658 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4580243 |
End bp | 4581907 |
Gene Length | 1665 bp |
Protein Length | 554 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640934713 |
Product | methyl-accepting chemotaxis sensory transducer |
Protein accession | YP_001475491 |
Protein GI | 157376891 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0990388 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAATA TGAGTTTGAA GAATAAACTG CTGTTATTTG CCCTTTTACC AGTGGCGGTG ATCTTTTTTA GCTTAATGGC TATTACCTAT AACATTGAGT CGAATAACCT CGAAAAAAAT GTGTCATCTT TCAAAGAGAA GTTAATTGAA GACCGAAAGG CGGTGTTAAA AGAGGAGATT GAAATTGCTG TTCAGATCGT TGTCTACCAA CAGTCATTGG GTGAGCAAGG AGATGTAAAA GCGGCGCTAA GACAGGTGCG ATTTGGCCAG TCAGGCTATT TCTTCATCTA TGATGAGCAA GGGGTCAATA TTTTCCATGG TGCCAGCTCC GAAAGAGAGG GGAATAATTA CATTGGAATG ACAGATCCCA ATGGGAAGAG AGTCATTGTA GGTTTGCTTA ATGCCGCAAA AACAGGGGAT GGTACCTTCA ATTATCATCA TGATAAACCG GGCACTAGTG GCCTGGTTGA GAAAATTAGC TACAGTGAGA TGATTCCTGG CAGCGATTGG ATAATAGGAA CCGGGGCTTA CGTTGATGAT ATCGAAAGTG AGGTTCGCGA CTATCGGGAC ATCACCACTC AGCATATGCA AGATAAGGCG ATAACTGTCT TGGTTATTGT ACTTATTCTT GTTTTATTAA CCACGATAGC GGTGTTATAT ATTGCCCAGC GAATGGTCCG TCCAATAAGA AACATGGTGA CCAATTTAGA AGATATTGCC AAAGGTGAGG GAGACCTGAC TAAGCGACTG GATGTTGAGG GCAGTGATGA GATAGCGCAG CTCGGACTTG CCTTTAACCT GTTTGTCGAA AAATTGCAGG GAATCATTAA GGATGTCAGT AATGTCACTT TGGAGGTCAA GAGTGGTGCA GCTGATATTA ACAACCAGAC GCTGACGATG GGCGAGCAAC TGGTGAATCA TAATAATGAG ACTGATCAGG TGGTCACCGC TATCACTGAG ATGTCGGCAA CTGCGAGTGA GGTGGCACAA AATACGTCAC AGGTTGCCGA GGCGACGCTC GCCGCAACGG GTGATGTCAA TACGGCTCAG GAGTGCGTCG ATACTTCATT AACCGAAGTG TCATCATTAA TGGCCGAAAT AGACACCGCT GCGGAGCATA TTAATTCACT GAGTGAGCAA TCTAAAAAAA TTAACAGCGT ATTGACCGTA ATTGGCGGCA TTGCCGAGCA AACCAACCTG TTGGCATTAA ATGCAGCCAT TGAAGCGGCC AGGGCGGGTG AGCAGGGCCG AGGCTTCGCC GTCGTTGCCG ATGAGGTACG TAGTTTAGCC AGCAGGACTC AGGCCAGTAC CTTAGAGATT AATGAGATGC TCACTGAGCT TCATAACCTG GTATCACTGG CTGTGAGCAC CATGGATTCG AGCCAGAAAG GTTGTTTGCG CTCGGTTGAG TCCTCCAGAG CAATCTCTGA GAGCCTAGGT GCGGTAACGT CTGCGGTAAC ATCGATTAAT GATATGAGTA CACAAATCGC CACGGCGGCA ACCGAGCAAA GCTCAGTGAC CGAAGAGATT AACCGTAACG TCTTTGCGAT TCAGGATATT GTCAATGAGT TGATGAGTTC GAGCCAAAAC ACTTCAGGAG TGAGCCAAAA GCTGGCTCAG GAGGGGGACA GCCTCGGCGA GTTGGTTGGA CAGTTTAAGG TCTAG
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Protein sequence | MMNMSLKNKL LLFALLPVAV IFFSLMAITY NIESNNLEKN VSSFKEKLIE DRKAVLKEEI EIAVQIVVYQ QSLGEQGDVK AALRQVRFGQ SGYFFIYDEQ GVNIFHGASS EREGNNYIGM TDPNGKRVIV GLLNAAKTGD GTFNYHHDKP GTSGLVEKIS YSEMIPGSDW IIGTGAYVDD IESEVRDYRD ITTQHMQDKA ITVLVIVLIL VLLTTIAVLY IAQRMVRPIR NMVTNLEDIA KGEGDLTKRL DVEGSDEIAQ LGLAFNLFVE KLQGIIKDVS NVTLEVKSGA ADINNQTLTM GEQLVNHNNE TDQVVTAITE MSATASEVAQ NTSQVAEATL AATGDVNTAQ ECVDTSLTEV SSLMAEIDTA AEHINSLSEQ SKKINSVLTV IGGIAEQTNL LALNAAIEAA RAGEQGRGFA VVADEVRSLA SRTQASTLEI NEMLTELHNL VSLAVSTMDS SQKGCLRSVE SSRAISESLG AVTSAVTSIN DMSTQIATAA TEQSSVTEEI NRNVFAIQDI VNELMSSSQN TSGVSQKLAQ EGDSLGELVG QFKV
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