| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3256 |
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| Symbol | |
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| ID | 5613722 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3950608 |
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| End bp | 3952284 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640934194 |
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| Product | methyl-accepting chemotaxis protein |
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| Protein accession | YP_001474988 |
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| Protein GI | 157376388 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTAATAA AAACGAAGTT ATATGCAAGT GGCGCTCTAC TTTGTGTTTT GCTTATCGGG
ATTAGTCTTG GTGCTATGGT CTCTTTTAAT GGCCTGACTC AACGTTTTGA GCAGGTTGTA
GATGCGTCAT CGAGTAGTGC AAAGAGTGCC GAGAAGGCAA CGCAAGGCTC GGCCAGCGGA
AGCGAGCAAC TTGGCGTCGT CAATGCCGAC ATGATGTCGA TTGTCGATGG CATCAAGCGT
GCAAATCAAA GAACAAAACT TATCAGTAAG AAAGTCGATG ATATCAACGT GACGCTGACT
GAGCTGATGG ATACGATCGA AGAGCTATCG GAAGATGTGA CCGACGAAGA TGCGCTGTCT
ATTCTGGAAG AGGTTAGCGA TGAGATAGGC GACATCAGTG AGCGACTCAG GCGTGAGGCA
TTAATTAATA TTGTCGATTC GTCTAAAAAT ATGGACAACT TCAGCGTTCA AATTTCACAG
CAGGCTGCTA AGGTCTCCGA GCTTGACGTC TTCTTGCGTC AGCAGGTTGA GGTGAGTCAG
TCAACTCTGG ATACCAGCGC CGAAATTAAA GATCTGGCGA CTGAAGCTTC CGGCGAAGTG
CAATGGCAGC AAAAACTGTT TGTGTCTGCG TTAGTGATTT TGGCTTTGTT GTCTATGGCC
GCCGCGTTCC TTATCGTGCG GGCCGTGATT CATCCTATCA ATAAGACTGT GCACCTTATG
CAGGATATTG CCGATGGTGA TGGCGACCTG ACTCAACGCC TGGAGGCGGA GGGGGATGAT
GAGATGGCGT TAATTGCCGG CGCCTTCAAT CGTTTCGTTG AAAAAATTCA GGTTCTGCTT
ACCGACGTCA CCCACTCAAT GGAGGAGTTA CGTCAGGCCT CGAATCAAAC CCTGCAAGCG
ATGACGGATG GCAATGAGGC GATGCACAAA CAGCAGCAGG AAGTTGAACA GATCGCCACC
GCGATTAATG AGATGAGTGT GACCTCTCAG GAAGTGGCCC AGAATGCAAT TGGCGCCGAA
ACGGCAGCGG TCGAAGTCAA TGGGCATGCA GATTCGGGTA AGCTGGTCGT TAACAGTGCG
TTGAGTTCGG TTGCCAGCCT TGCCGATGAA GTACAAAGTG CAGTCGATGT CATCGATTCA
TTGGATCAAA AGTCTTCATC TATCTATTCT GTGGTTAATG TTATTCAGTC GGTATCGGAG
CAGACAAACT TGCTGGCACT CAACGCTGCT ATCGAGGCTG CCAGGGCCGG TGAGCAGGGG
AGAGGGTTTG CAGTCGTGGC CGATGAAGTT AGAGCCCTTG CCGCAAAAGC GGAAAGTAGT
ACCAAGGATA TTCGGGAGAT TATTGATGAA ATTCAAACTT TGACCAAGCA AGCTGTGACA
GCAATGGAGT CGAGCAAAAC GGTGAGTTCT GATACCCTGC AAGGTGCGCA ATCTGCGAGT
GAGGCGCTGG ATGCGATAAC CGGCTCCATG CACACCGTGA CAGAGATGAA TACTCAAATT
GCTCATGCAG CGACCGAGCA AACCGGGGTC ACCGACGAGT TGAATCAGAG GGTAATTCAG
ATAAGCGAGT TGTCTAACCT GACATCAATC CAAGTGTCAA ATACGGTAGA GACTTGTGAG
TCGTTAAATC GAATAAGCGA GACGCTTTCA AAGCAGCTGA CTCAATTTAA AGTGTAG
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| Protein sequence | MLIKTKLYAS GALLCVLLIG ISLGAMVSFN GLTQRFEQVV DASSSSAKSA EKATQGSASG
SEQLGVVNAD MMSIVDGIKR ANQRTKLISK KVDDINVTLT ELMDTIEELS EDVTDEDALS
ILEEVSDEIG DISERLRREA LINIVDSSKN MDNFSVQISQ QAAKVSELDV FLRQQVEVSQ
STLDTSAEIK DLATEASGEV QWQQKLFVSA LVILALLSMA AAFLIVRAVI HPINKTVHLM
QDIADGDGDL TQRLEAEGDD EMALIAGAFN RFVEKIQVLL TDVTHSMEEL RQASNQTLQA
MTDGNEAMHK QQQEVEQIAT AINEMSVTSQ EVAQNAIGAE TAAVEVNGHA DSGKLVVNSA
LSSVASLADE VQSAVDVIDS LDQKSSSIYS VVNVIQSVSE QTNLLALNAA IEAARAGEQG
RGFAVVADEV RALAAKAESS TKDIREIIDE IQTLTKQAVT AMESSKTVSS DTLQGAQSAS
EALDAITGSM HTVTEMNTQI AHAATEQTGV TDELNQRVIQ ISELSNLTSI QVSNTVETCE
SLNRISETLS KQLTQFKV
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