More than 300 homologs were found in PanDaTox collection
for query gene Shew_2119 on replicon NC_009092
Organism: Shewanella loihica PV-4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_1983  methyl-accepting chemotaxis sensory transducer  72.81 
 
 
548 aa  801    Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.000213036  normal  0.437149 
 
 
-
 
NC_009092  Shew_2119  methyl-accepting chemotaxis sensory transducer  100 
 
 
548 aa  1097    Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_2617  methyl-accepting chemotaxis sensory transducer  70.44 
 
 
548 aa  753    Shewanella woodyi ATCC 51908  Bacteria  normal  0.224982  normal  0.210295 
 
 
-
 
NC_008345  Sfri_2212  methyl-accepting chemotaxis sensory transducer  62.96 
 
 
549 aa  679    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2327  putative methyl-accepting chemotaxis sensory transducer  63.22 
 
 
554 aa  676    Shewanella amazonensis SB2B  Bacteria  normal  0.644098  normal  0.637343 
 
 
-
 
NC_007492  Pfl01_2601  chemotaxis sensory transducer  34.94 
 
 
569 aa  332  1e-89  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.441915  normal  0.36116 
 
 
-
 
NC_009439  Pmen_2174  methyl-accepting chemotaxis sensory transducer  38.11 
 
 
544 aa  332  1e-89  Pseudomonas mendocina ymp  Bacteria  normal  decreased coverage  0.00506259 
 
 
-
 
NC_009457  VC0395_A2659  methyl-accepting chemotaxis protein  36.58 
 
 
556 aa  330  5.0000000000000004e-89  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  39.08 
 
 
548 aa  330  5.0000000000000004e-89  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_008321  Shewmr4_1767  methyl-accepting chemotaxis sensory transducer  36.07 
 
 
545 aa  330  5.0000000000000004e-89  Shewanella sp. MR-4  Bacteria  normal  0.381763  normal 
 
 
-
 
NC_008322  Shewmr7_1845  methyl-accepting chemotaxis sensory transducer  36.07 
 
 
545 aa  329  8e-89  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_4964  methyl-accepting chemotaxis protein  34.87 
 
 
545 aa  327  5e-88  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2240  methyl-accepting chemotaxis protein  35.64 
 
 
545 aa  324  3e-87  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_1776  histidine kinase, HAMP region: chemotaxis sensory transducer  34.68 
 
 
543 aa  323  5e-87  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.363817 
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  36.9 
 
 
564 aa  318  2e-85  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2358  methyl-accepting chemotaxis sensory transducer  36.55 
 
 
545 aa  317  5e-85  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2254  methyl-accepting chemotaxis sensory transducer  36.25 
 
 
545 aa  316  6e-85  Shewanella sp. ANA-3  Bacteria  normal  normal  0.492 
 
 
-
 
NC_009997  Sbal195_2463  methyl-accepting chemotaxis sensory transducer  36.55 
 
 
545 aa  316  6e-85  Shewanella baltica OS195  Bacteria  normal  0.0650014  normal  0.35347 
 
 
-
 
NC_009665  Shew185_2347  methyl-accepting chemotaxis sensory transducer  36.55 
 
 
545 aa  316  6e-85  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_2000  methyl-accepting chemotaxis sensory transducer with Cache sensor  36.55 
 
 
545 aa  315  9.999999999999999e-85  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.0000194984 
 
 
-
 
NC_009438  Sputcn32_2116  methyl-accepting chemotaxis sensory transducer  35.73 
 
 
545 aa  314  1.9999999999999998e-84  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_2757  methyl-accepting chemotaxis sensory transducer  34.38 
 
 
544 aa  313  7.999999999999999e-84  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2828  methyl-accepting chemotaxis sensory transducer  34.68 
 
 
544 aa  309  6.999999999999999e-83  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2861  methyl-accepting chemotaxis sensory transducer  34.5 
 
 
544 aa  307  3e-82  Pseudomonas putida KT2440  Bacteria  normal  normal  0.445183 
 
 
-
 
NC_004578  PSPTO_3699  methyl-accepting chemotaxis protein  37.7 
 
 
543 aa  305  2.0000000000000002e-81  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_2920  methyl-accepting chemotaxis sensory transducer  34.62 
 
 
544 aa  303  4.0000000000000003e-81  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0400  methyl-accepting chemotaxis protein  34.31 
 
 
549 aa  303  6.000000000000001e-81  Geobacter sulfurreducens PCA  Bacteria  normal  0.431065  n/a   
 
 
-
 
NC_012918  GM21_3709  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.99 
 
 
546 aa  301  3e-80  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013456  VEA_001822  methyl-accepting chemotaxis protein  35.24 
 
 
557 aa  299  1e-79  Vibrio sp. Ex25  Bacteria  unclonable  0.00000124429  n/a   
 
 
-
 
NC_009831  Ssed_2412  methyl-accepting chemotaxis sensory transducer  36.07 
 
 
545 aa  299  1e-79  Shewanella sediminis HAW-EB3  Bacteria  normal  0.516535  hitchhiker  0.00000653474 
 
 
-
 
NC_009457  VC0395_A2596  methyl-accepting chemotaxis protein  35.43 
 
 
564 aa  293  7e-78  Vibrio cholerae O395  Bacteria  unclonable  0.00000000000057467  n/a   
 
 
-
 
NC_011138  MADE_03718  putative chemotaxis sensory protein  35.57 
 
 
540 aa  291  2e-77  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3600  methyl-accepting chemotaxis sensory transducer  34.26 
 
 
546 aa  289  1e-76  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2194  methyl-accepting chemotaxis sensory transducer  36.18 
 
 
545 aa  285  1.0000000000000001e-75  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.00216283 
 
 
-
 
NC_009831  Ssed_0837  methyl-accepting chemotaxis sensory transducer  37.24 
 
 
554 aa  283  8.000000000000001e-75  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1868  methyl-accepting chemotaxis sensory transducer  37.76 
 
 
545 aa  282  1e-74  Shewanella loihica PV-4  Bacteria  normal  hitchhiker  0.0000255174 
 
 
-
 
NC_009901  Spea_1997  methyl-accepting chemotaxis sensory transducer  35.53 
 
 
546 aa  279  9e-74  Shewanella pealeana ATCC 700345  Bacteria  normal  0.179465  n/a   
 
 
-
 
NC_009092  Shew_0808  methyl-accepting chemotaxis sensory transducer  32.22 
 
 
554 aa  273  6e-72  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3759  methyl-accepting chemotaxis sensory transducer  34.59 
 
 
554 aa  271  2e-71  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0990388  normal 
 
 
-
 
NC_008345  Sfri_1770  methyl-accepting chemotaxis sensory transducer  34.12 
 
 
538 aa  271  2e-71  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1653  putative methyl-accepting chemotaxis sensory transducer  36.43 
 
 
538 aa  270  4e-71  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1030  methyl-accepting chemotaxis protein  34.35 
 
 
549 aa  270  5e-71  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3200  methyl-accepting chemotaxis sensory transducer  33.46 
 
 
554 aa  270  5.9999999999999995e-71  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_0987  methyl-accepting chemotaxis protein  35.62 
 
 
554 aa  269  8e-71  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_3299  methyl-accepting chemotaxis sensory transducer  35.77 
 
 
554 aa  269  8e-71  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3199  methyl-accepting chemotaxis sensory transducer  35.77 
 
 
554 aa  268  1e-70  Shewanella sp. MR-7  Bacteria  normal  normal  0.927661 
 
 
-
 
NC_009457  VC0395_A0868  methyl-accepting chemotaxis protein  35.77 
 
 
536 aa  267  2.9999999999999995e-70  Vibrio cholerae O395  Bacteria  hitchhiker  0.000231989  n/a   
 
 
-
 
NC_008700  Sama_2880  putative methyl-accepting chemotaxis sensory transducer  33.57 
 
 
558 aa  267  2.9999999999999995e-70  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0824  methyl-accepting chemotaxis sensory transducer  35.77 
 
 
554 aa  267  4e-70  Shewanella sp. MR-4  Bacteria  normal  hitchhiker  0.00067966 
 
 
-
 
NC_007517  Gmet_1078  methyl-accepting chemotaxis sensory transducer  34.07 
 
 
587 aa  265  1e-69  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00101669 
 
 
-
 
NC_009438  Sputcn32_3052  methyl-accepting chemotaxis sensory transducer  36.19 
 
 
554 aa  265  2e-69  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3532  methyl-accepting chemotaxis sensory transducer  34.39 
 
 
555 aa  263  4e-69  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3491  methyl-accepting chemotaxis sensory transducer  35.76 
 
 
554 aa  261  3e-68  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_3617  methyl-accepting chemotaxis sensory transducer  35.34 
 
 
554 aa  260  4e-68  Shewanella baltica OS195  Bacteria  normal  normal  0.964358 
 
 
-
 
NC_009997  Sbal195_1793  methyl-accepting chemotaxis sensory transducer  33.03 
 
 
533 aa  260  4e-68  Shewanella baltica OS195  Bacteria  normal  0.0175347  normal  0.776493 
 
 
-
 
NC_009438  Sputcn32_0672  methyl-accepting chemotaxis sensory transducer  33.09 
 
 
568 aa  260  5.0000000000000005e-68  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_2530  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.03 
 
 
533 aa  260  5.0000000000000005e-68  Shewanella baltica OS223  Bacteria  normal  0.616311  hitchhiker  0.00580613 
 
 
-
 
NC_009052  Sbal_0870  methyl-accepting chemotaxis sensory transducer  33.27 
 
 
554 aa  259  8e-68  Shewanella baltica OS155  Bacteria  normal  0.0571565  n/a   
 
 
-
 
NC_008321  Shewmr4_3323  methyl-accepting chemotaxis sensory transducer  35.98 
 
 
554 aa  259  9e-68  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3422  methyl-accepting chemotaxis sensory transducer with Cache sensor  35.34 
 
 
554 aa  259  9e-68  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3217  methyl-accepting chemotaxis sensory transducer with Cache sensor  34.74 
 
 
584 aa  258  2e-67  Geobacter sp. M21  Bacteria  n/a    normal  0.480757 
 
 
-
 
NC_009665  Shew185_3494  methyl-accepting chemotaxis sensory transducer  35.14 
 
 
554 aa  258  2e-67  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2347  methyl-accepting chemotaxis sensory transducer  34.68 
 
 
533 aa  258  2e-67  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_0630  methyl-accepting chemotaxis sensory transducer  35.77 
 
 
554 aa  258  2e-67  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2000  methyl-accepting chemotaxis sensory transducer  36.84 
 
 
560 aa  257  3e-67  Pseudomonas mendocina ymp  Bacteria  normal  0.0144557  normal  0.0324669 
 
 
-
 
NC_010814  Glov_0461  methyl-accepting chemotaxis sensory transducer  32.6 
 
 
569 aa  258  3e-67  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0641  methyl-accepting chemotaxis sensory transducer  35.07 
 
 
568 aa  257  4e-67  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  34.17 
 
 
559 aa  256  5e-67  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1044  methyl-accepting chemotaxis sensory transducer  34.36 
 
 
584 aa  256  5e-67  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3789  methyl-accepting chemotaxis sensory transducer  35.07 
 
 
554 aa  255  1.0000000000000001e-66  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2167  methyl-accepting chemotaxis sensory transducer  33.27 
 
 
585 aa  255  1.0000000000000001e-66  Geobacter uraniireducens Rf4  Bacteria  normal  0.38945  n/a   
 
 
-
 
NC_011663  Sbal223_3601  methyl-accepting chemotaxis sensory transducer with Cache sensor  35.07 
 
 
554 aa  255  1.0000000000000001e-66  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_010483  TRQ2_1321  methyl-accepting chemotaxis sensory transducer  32.62 
 
 
566 aa  255  1.0000000000000001e-66  Thermotoga sp. RQ2  Bacteria  decreased coverage  0.00082247  n/a   
 
 
-
 
NC_009665  Shew185_3666  methyl-accepting chemotaxis sensory transducer  35.36 
 
 
554 aa  254  2.0000000000000002e-66  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2825  methyl-accepting chemotaxis sensory transducer  29.4 
 
 
570 aa  255  2.0000000000000002e-66  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.000443347 
 
 
-
 
NC_013457  VEA_000971  methyl-accepting chemotaxis protein  36.44 
 
 
553 aa  254  2.0000000000000002e-66  Vibrio sp. Ex25  Bacteria  normal  0.370017  n/a   
 
 
-
 
NC_009486  Tpet_1365  methyl-accepting chemotaxis sensory transducer  32.17 
 
 
566 aa  253  4.0000000000000004e-66  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0581  methyl-accepting chemotaxis sensory transducer  32.78 
 
 
554 aa  253  8.000000000000001e-66  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3394  methyl-accepting chemotaxis sensory transducer  32.12 
 
 
664 aa  252  1e-65  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.00000171268  n/a   
 
 
-
 
NC_009784  VIBHAR_05691  histidine kinase  33.02 
 
 
538 aa  251  3e-65  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008752  Aave_2643  methyl-accepting chemotaxis sensory transducer  30.73 
 
 
541 aa  244  1.9999999999999999e-63  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0238907  normal  0.0164957 
 
 
-
 
NC_010623  Bphy_3823  methyl-accepting chemotaxis sensory transducer  31.3 
 
 
513 aa  245  1.9999999999999999e-63  Burkholderia phymatum STM815  Bacteria  normal  normal  0.793143 
 
 
-
 
NC_008577  Shewana3_2521  methyl-accepting chemotaxis sensory transducer  31.65 
 
 
533 aa  244  3.9999999999999997e-63  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.000172201 
 
 
-
 
NC_009656  PSPA7_2548  putative chemotaxis transducer  34.12 
 
 
561 aa  243  7e-63  Pseudomonas aeruginosa PA7  Bacteria  normal  0.271227  n/a   
 
 
-
 
NC_008740  Maqu_0339  methyl-accepting chemotaxis sensory transducer  34.37 
 
 
558 aa  243  9e-63  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_4404  methyl-accepting chemotaxis sensory transducer  34.9 
 
 
638 aa  241  2e-62  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0156105 
 
 
-
 
NC_009654  Mmwyl1_0877  methyl-accepting chemotaxis sensory transducer  30.8 
 
 
540 aa  241  2.9999999999999997e-62  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.11332 
 
 
-
 
NC_007954  Sden_0099  chemotaxis sensory transducer  35.46 
 
 
639 aa  239  6.999999999999999e-62  Shewanella denitrificans OS217  Bacteria  unclonable  0.0000000152719  n/a   
 
 
-
 
NC_011004  Rpal_4941  methyl-accepting chemotaxis sensory transducer  31.36 
 
 
563 aa  239  1e-61  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.396774  n/a   
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  44.78 
 
 
637 aa  238  2e-61  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_009784  VIBHAR_07022  histidine kinase  35.6 
 
 
553 aa  237  3e-61  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008463  PA14_29800  putative chemotaxis transducer  33.69 
 
 
561 aa  238  3e-61  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.00431462  normal 
 
 
-
 
NC_011901  Tgr7_0851  methyl-accepting chemotaxis sensory transducer  44.35 
 
 
674 aa  237  5.0000000000000005e-61  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.244273  n/a   
 
 
-
 
NC_008345  Sfri_0080  methyl-accepting chemotaxis sensory transducer  34.69 
 
 
636 aa  236  9e-61  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2650  methyl-accepting chemotaxis sensory transducer  40.74 
 
 
568 aa  235  1.0000000000000001e-60  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_4795  methyl-accepting chemotaxis sensory transducer  34.82 
 
 
638 aa  234  2.0000000000000002e-60  Shewanella woodyi ATCC 51908  Bacteria  normal  0.884167  hitchhiker  0.000462611 
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  41.46 
 
 
638 aa  234  4.0000000000000004e-60  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  39.95 
 
 
541 aa  233  7.000000000000001e-60  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_007492  Pfl01_3768  chemotaxis sensory transducer  33.94 
 
 
560 aa  231  2e-59  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_05646  histidine kinase  34.25 
 
 
482 aa  231  2e-59  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
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