| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_0672 |
|---|
| Symbol | |
|---|
| ID | 5082080 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 753633 |
|---|
| End bp | 755339 |
|---|
| Gene Length | 1707 bp |
|---|
| Protein Length | 568 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640497797 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001182201 |
|---|
| Protein GI | 146291777 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein
[COG4564] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGGAT TTTGGCAGAC AGTAGGGGGG CGATTACTCA GCATTCCGTT ACTGGCATTG
CTGGGTTTCG TGGTGCTGGG CATCATGGAG CTAAACGCAC TTAACCAGAG TTTGACTAAG
GGGAGGGAAG ATCGCGTTGT GGCGATTATT GATAGCAGCC TGAGTATCGT TAAACATTAT
CAGACACTGG AGCAAAGCGG TGCATTAAGC ACTGAGCAAG CGCAGCAGCA GGCCATGTCG
ACTATTAAGG CCATTCGTTA TGATGGTACT GAATATATTT GGATTAACGA TACCGGTCGG
CCTATCCCCA AAATGGTTAT GCATCCAACC GTATCCACTT TAGACGGCAC TGTACTGGAC
AAACCCAACT TTCATCACGC GACCTTAATG CGTAACCGTG ATGGCAGCCA ACAACAAACA
CTGAGCAACG CCAACTTGTT TGTCAGTTTT GTTGACGTTA TCGACCGTTA TGGCAATGGT
TTTGTTGAGT ACCAATGGCC TAAACCCTTA AAAGGTGGGG GAGTGACGCA GGAGCGTTAT
ACCAAGTTGT CCTATGTGGC AAAAGATGAC AAATGGGGCT GGGTGCTCGG TTCTGGAATT
TATATTGATG ATGTTAAAGC GGCCTTCTGG GAAGTCGCTA TGAGAGTTGG GTTGGTCGTC
GTGGTTATTA TGGCCCTGAC AGTTGGTGTG TCTTTGTATA TCCGCCGCTG GTTATTGCAG
GCACTAGGTG GGGAACTGGC GACAACCAAA GCACTGGTGC AGCAGGTTGC GGCGGGTGAT
TTCTCAGTGA ACTTTGGGTT AAATCCGGGT GATAACGACA GCTTGTTGGC GGCATTAAGT
GGCCTTATCA GCCAGTTGCG CAGTATTATC GGCCAGCAAT CGGCAATGGC TGAGCAATTG
GTCAAGCAAT CAGAGGTACT TGAGGACACC AGCCAACAGA CGCAGCATAT TTTACAAAGT
GTGATGGACC AAACTGCTCA AGTGGCTACC GCGGTCAATG AAATGACCTC GACTTGTGAG
GATATGGCCC GCAGCGCGAC TCTGGCCGCT AAAGCGACCA GAGATGCTGA TACTGAAGCC
AAAAACGGCG TGACATCCGT AGGCCAAACG ATAACGGCCA TTGATGCGCT TAAAGTAAAA
CTGGAGCAAG TCTCTGATGT GATAGGGCAG TTGTCTAAAC GTGGCGATGA AATTGGTGCG
GTCACCGATG TTATCGGTGC GATTGCGGAG CAGACCAATC TATTGGCATT AAATGCGGCG
ATAGAAGCGG CGCGTGCTGG AGAAATGGGT CGCGGATTTG CTGTTGTGGC CGATGAAGTG
CGTACCCTTG CTAGCCGCTC TCAGGCGTCA ACTCAGGATA TCAATAGGCG TATTCAAGGC
ATTCAGCAAG ACTCTGCCAA CGCCGTGCAA TCGATGGCGC AAAGTCGAAC CGAAACGGAG
CAAACAATAG TCTGTTCTCA GCAGGCCAGC GAGGCGCTAA CCCGCATTAA CACTGCCGTG
TCGAGCATTA CCGATGTCAA CGATCAATTG GCCAGCGCCA CAGAACAACT GGCCGTTGTG
TCGGGTACGA TTAATCAAAA TATGGAGAAT ATTGCGCAGG CGGTGGAAAA CACCAATGCA
AAATCTTCAG AACTATCGAC TGCCAGCCAT CAACTACGGA ACATGGCTAG TGATATGAAA
AAGTCACTGA GTGGCTTTAG GTTATAA
|
|---|
| Protein sequence | MTGFWQTVGG RLLSIPLLAL LGFVVLGIME LNALNQSLTK GREDRVVAII DSSLSIVKHY
QTLEQSGALS TEQAQQQAMS TIKAIRYDGT EYIWINDTGR PIPKMVMHPT VSTLDGTVLD
KPNFHHATLM RNRDGSQQQT LSNANLFVSF VDVIDRYGNG FVEYQWPKPL KGGGVTQERY
TKLSYVAKDD KWGWVLGSGI YIDDVKAAFW EVAMRVGLVV VVIMALTVGV SLYIRRWLLQ
ALGGELATTK ALVQQVAAGD FSVNFGLNPG DNDSLLAALS GLISQLRSII GQQSAMAEQL
VKQSEVLEDT SQQTQHILQS VMDQTAQVAT AVNEMTSTCE DMARSATLAA KATRDADTEA
KNGVTSVGQT ITAIDALKVK LEQVSDVIGQ LSKRGDEIGA VTDVIGAIAE QTNLLALNAA
IEAARAGEMG RGFAVVADEV RTLASRSQAS TQDINRRIQG IQQDSANAVQ SMAQSRTETE
QTIVCSQQAS EALTRINTAV SSITDVNDQL ASATEQLAVV SGTINQNMEN IAQAVENTNA
KSSELSTASH QLRNMASDMK KSLSGFRL
|
|---|
| |