| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3052 |
|---|
| Symbol | |
|---|
| ID | 5079794 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 3539538 |
|---|
| End bp | 3541202 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640500250 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001184564 |
|---|
| Protein GI | 146294140 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAATT TTAGTTTGCG CAATAAATTA CTATTGTTAT CTCTGTTTCC CCTGATCTTA
ACTTTACTGA TATTGATGTC TGTTTCTTAC TATGTCGAGA AAGAGGCACT TGATGATGAA
GTGGTTACCT TTAAAACTAA ACTCGTTGGT GAACGTAAAC AACAAATAAA AGAAGCGACG
GAAATTGCCG CAGGAATAGT GCAGTACCAA ATATCTTTAA AAGATCAAGG TAATGTCAAT
CAAGCCCTGC GGGATATTCG TTTTGGTAGT GCAGGGTATT TCTTTATATA CGACTCTAAA
GGTAAAAATA TTTTCCATGC CCTGCTACCT GCACTGGAAG GGCAAGATAA AATTGACATG
ACAGACCCCC GCGGAACCAA AATTATTGTC GGTTTGCTTA ATGCTGCACA GCGAGGTGAT
GGTCACTTTT CCTATTACTA TCAAAAGCCT AATACTAACG AACAAATTGA GAAACTCAGT
TATGTGACTA TGGTGCCCGG CACGGATTGG ATGTTAGGAA CGGGGGCTTA TATTGATGAT
ATCGAAGCGG TAGTCGAAGA TTATCGCATC ACAGTGACAG AACAAATGGT GGATAAATCC
TATGGGCTGC TACTCATTGC ACTGTTACTC ACGGGGTTTA CAGCCTTTAT CATCATGATA
GCCGCACACC GTATGGTGGT GCCCATTCAA AAAATGGCTG AAAATCTAAA TGATATTGCT
AAGGGTGAAG GCGATTTAAC TAAGCGCCTT CTCGTAAAAG GCGAAGATGA AATTGCCCAA
TTAGGCCAAT CCTTTAACCT CTTTGTTGAT AAACTGCAGA CTATTATTGG GGATGTAGCG
AGTGCGACCA CGAAAGTAAA AGAGGCGGCG AATGCGATTC ACGATCAAAC CAAAGTGATG
TCAAGCCAGC TTATCAGCCA TAACAATGAA ACCGATCAAG TGGTGACAGC CATCACTGAG
ATGTCTTCCA CTGCCAGTGA AGTTGCGCAA AATACCACGC AAGTGGCAGA AGCGACTCAA
GCTGCCACGG GGGATGTTGC TAATGCTCAA CGCTGTGTTG ATGCTTCCCT AGAAGAAATC
GCAGGTTTGA TGGAGCAAAT TAATCACGCG GCGGGCAGCA TTCAATCTTT AAGTGAGCAA
TCCCAGAAGA TTAACAGTGT GCTTTCGGTC ATTGGTGGTA TTGCTGAACA AACCAACCTG
TTAGCATTAA ACGCGGCAAT TGAAGCGGCC CGTGCAGGTG AGCAGGGTAG AGGTTTTGCG
GTGGTGGCCG ATGAAGTGCG TAATCTCGCC AGCCGTACTC AGGCTAGCAC TTTAGAAATT
AACGAGATGT TATCTGCGCT GCATAAACTT GTCGCCCAAG CGGTCAAAAC GATGGAGGAC
AGCCAACAAA GTTGTGTGCG TTCGGTAGCG TCTTCCCGTG CTATTTCTGA AAGTTTAGGT
TCTGTGACTT CAGCGGTAAC GGCCATTAAT GATATGAGTA CTCAAATTGC GACTGCGGCT
ACTGAGCAAA GCTCTGTTAC CGAGGAAATT AACCGCAATG TATATGCTAT TCAAGAAATT
GTGAACGAGT TACTCCATTC TAGCCAAGAT GCGGCCAGAA TTAGTCAAAC CGTATCGCAG
GAGGGGACTA ACTTAGGTAA ATTAGTCGGA CAGTTTAAGA TTTAA
|
|---|
| Protein sequence | MSNFSLRNKL LLLSLFPLIL TLLILMSVSY YVEKEALDDE VVTFKTKLVG ERKQQIKEAT
EIAAGIVQYQ ISLKDQGNVN QALRDIRFGS AGYFFIYDSK GKNIFHALLP ALEGQDKIDM
TDPRGTKIIV GLLNAAQRGD GHFSYYYQKP NTNEQIEKLS YVTMVPGTDW MLGTGAYIDD
IEAVVEDYRI TVTEQMVDKS YGLLLIALLL TGFTAFIIMI AAHRMVVPIQ KMAENLNDIA
KGEGDLTKRL LVKGEDEIAQ LGQSFNLFVD KLQTIIGDVA SATTKVKEAA NAIHDQTKVM
SSQLISHNNE TDQVVTAITE MSSTASEVAQ NTTQVAEATQ AATGDVANAQ RCVDASLEEI
AGLMEQINHA AGSIQSLSEQ SQKINSVLSV IGGIAEQTNL LALNAAIEAA RAGEQGRGFA
VVADEVRNLA SRTQASTLEI NEMLSALHKL VAQAVKTMED SQQSCVRSVA SSRAISESLG
SVTSAVTAIN DMSTQIATAA TEQSSVTEEI NRNVYAIQEI VNELLHSSQD AARISQTVSQ
EGTNLGKLVG QFKI
|
|---|
| |