More than 300 homologs were found in PanDaTox collection
for query gene RPB_4231 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007778  RPB_4231  Crp/FNR family transcriptional regulator  100 
 
 
220 aa  447  1e-125  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.572136 
 
 
-
 
NC_007958  RPD_4082  cyclic nucleotide-binding  84.55 
 
 
220 aa  363  1e-99  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4909  transcriptional regulator, Crp/Fnr family  70.14 
 
 
221 aa  302  2.0000000000000002e-81  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.385812  n/a   
 
 
-
 
NC_007925  RPC_4410  Crp/FNR family transcriptional regulator  59.43 
 
 
225 aa  242  3.9999999999999997e-63  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.994375  normal  0.444525 
 
 
-
 
NC_009485  BBta_6723  putative cyclic-AMP receptor-like protein  52.56 
 
 
235 aa  216  2.9999999999999998e-55  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.823634  normal 
 
 
-
 
NC_007958  RPD_1742  cyclic nucleotide-binding  51.16 
 
 
251 aa  205  4e-52  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3749  Crp/FNR family transcriptional regulator  52.56 
 
 
228 aa  202  3e-51  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.9168  normal 
 
 
-
 
NC_007964  Nham_2535  cyclic nucleotide-binding domain-containing protein  47.95 
 
 
228 aa  202  3e-51  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1723  cyclic nucleotide-binding  52.56 
 
 
228 aa  201  9.999999999999999e-51  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.637067  normal 
 
 
-
 
NC_011004  Rpal_4383  transcriptional regulator, Crp/Fnr family  49.07 
 
 
221 aa  196  3e-49  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.140178  n/a   
 
 
-
 
NC_009485  BBta_1632  Crp/FNR family transcriptional regulator  46.08 
 
 
250 aa  184  1.0000000000000001e-45  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_0065  Crp/FNR family transcriptional regulator  44.76 
 
 
258 aa  165  5.9999999999999996e-40  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0605636  normal 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  35.29 
 
 
352 aa  97.1  2e-19  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  32.2 
 
 
224 aa  89.7  3e-17  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_2591  transcriptional regulator, Crp/Fnr family  32.96 
 
 
221 aa  89  5e-17  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.44001  normal 
 
 
-
 
NC_013730  Slin_1271  transcriptional regulator, Crp/Fnr family  29.57 
 
 
350 aa  85.5  6e-16  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  29.71 
 
 
236 aa  82.8  0.000000000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  28.65 
 
 
219 aa  83.2  0.000000000000003  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_008044  TM1040_1951  Crp/FNR family transcriptional regulator  30.23 
 
 
222 aa  80.1  0.00000000000002  Ruegeria sp. TM1040  Bacteria  normal  0.861655  normal  0.0267012 
 
 
-
 
NC_008148  Rxyl_0860  Crp/FNR family transcriptional regulator  32 
 
 
234 aa  79.3  0.00000000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.693979  n/a   
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  27.27 
 
 
228 aa  77  0.0000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_5316  transcriptional regulator, Crp/Fnr family  29.41 
 
 
354 aa  76.6  0.0000000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.100222 
 
 
-
 
NC_008254  Meso_2246  Crp/FNR family transcriptional regulator  29.67 
 
 
233 aa  76.3  0.0000000000003  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  25.7 
 
 
225 aa  76.6  0.0000000000003  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  27.68 
 
 
226 aa  75.5  0.0000000000005  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  26.7 
 
 
225 aa  75.5  0.0000000000006  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_012560  Avin_22000  transcriptional regulator, Crp/Fnr family  27.53 
 
 
235 aa  75.1  0.0000000000008  Azotobacter vinelandii DJ  Bacteria  normal  0.457493  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  26.7 
 
 
225 aa  75.1  0.0000000000008  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  27.68 
 
 
225 aa  75.1  0.0000000000009  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0783  CRP/FNR family transcriptional regulator  32.39 
 
 
217 aa  74.7  0.0000000000009  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  27.78 
 
 
231 aa  74.7  0.000000000001  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  28.57 
 
 
229 aa  73.6  0.000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  29.61 
 
 
220 aa  73.6  0.000000000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  27.33 
 
 
228 aa  73.9  0.000000000002  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  26.98 
 
 
247 aa  73.2  0.000000000003  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1119  catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein)  27.47 
 
 
222 aa  73.2  0.000000000003  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.106899 
 
 
-
 
NC_010524  Lcho_4140  cyclic nucleotide-binding protein  27.17 
 
 
243 aa  73.2  0.000000000003  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  26.97 
 
 
225 aa  73.2  0.000000000003  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2020  transcriptional regulator, Crp/Fnr family  32.02 
 
 
239 aa  73.2  0.000000000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.0424227  n/a   
 
 
-
 
NC_012791  Vapar_4417  transcriptional regulator, Crp/Fnr family  31.15 
 
 
258 aa  72.8  0.000000000004  Variovorax paradoxus S110  Bacteria  normal  0.48784  n/a   
 
 
-
 
NC_011830  Dhaf_3158  transcriptional regulator, Crp/Fnr family  29.21 
 
 
223 aa  72.8  0.000000000004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  27.54 
 
 
226 aa  72  0.000000000006  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  28.26 
 
 
236 aa  72  0.000000000007  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_013411  GYMC61_1592  transcriptional regulator, Crp/Fnr family  27.51 
 
 
228 aa  71.6  0.000000000008  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  26.47 
 
 
228 aa  71.6  0.000000000008  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  28.02 
 
 
240 aa  71.6  0.000000000008  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  27.17 
 
 
243 aa  71.6  0.000000000008  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  28.98 
 
 
243 aa  71.2  0.00000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_007298  Daro_3198  Crp/FNR family transcriptional regulator  23.98 
 
 
231 aa  71.2  0.00000000001  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_0291  Crp/FNR family transcriptional regulator  27.65 
 
 
227 aa  70.9  0.00000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.277011  normal 
 
 
-
 
NC_013216  Dtox_2750  transcriptional regulator, Crp/Fnr family  28.66 
 
 
222 aa  71.6  0.00000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.0000000354449  normal  0.602467 
 
 
-
 
NC_008242  Meso_4277  Crp/FNR family transcriptional regulator  28.42 
 
 
234 aa  71.2  0.00000000001  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  26.14 
 
 
226 aa  71.2  0.00000000001  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_013132  Cpin_5556  transcriptional regulator, Crp/Fnr family  25.7 
 
 
352 aa  70.5  0.00000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.487576  normal  0.0420739 
 
 
-
 
NC_011830  Dhaf_1859  transcriptional regulator, Crp/Fnr family  26.82 
 
 
220 aa  69.7  0.00000000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  25.28 
 
 
226 aa  69.7  0.00000000003  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_013730  Slin_3553  transcriptional regulator, Crp/Fnr family  30.99 
 
 
348 aa  69.7  0.00000000004  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.528491 
 
 
-
 
NC_014248  Aazo_3421  Crp/Fnr family transcriptional regulator  27.18 
 
 
232 aa  69.3  0.00000000004  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3679  Crp/FNR family transcriptional regulator  29.03 
 
 
216 aa  69.3  0.00000000004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.170413  normal  0.193267 
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  26.09 
 
 
226 aa  69.3  0.00000000004  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_009485  BBta_4881  putative cyclic-AMP receptor-like protein  25.43 
 
 
281 aa  68.9  0.00000000005  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.353478  normal  0.139273 
 
 
-
 
NC_013172  Bfae_24470  cAMP-binding protein  27.78 
 
 
261 aa  68.9  0.00000000006  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  26.7 
 
 
226 aa  68.9  0.00000000006  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  27.03 
 
 
231 aa  68.9  0.00000000006  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  28.09 
 
 
226 aa  68.9  0.00000000006  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_010424  Daud_1482  CRP/FNR family transcriptional regulator  27.54 
 
 
235 aa  68.6  0.00000000006  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000000238682  n/a   
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  26.7 
 
 
225 aa  68.9  0.00000000006  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_010172  Mext_3348  cyclic nucleotide-binding  25.56 
 
 
254 aa  68.6  0.00000000008  Methylobacterium extorquens PA1  Bacteria  normal  0.181039  normal 
 
 
-
 
NC_007413  Ava_3066  Crp/FNR family transcriptional regulator  27.18 
 
 
232 aa  68.2  0.00000000009  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_008347  Mmar10_2635  cyclic nucleotide-binding protein  30.36 
 
 
228 aa  68.2  0.00000000009  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_0675  cyclic nucleotide-binding protein  27.51 
 
 
240 aa  67.4  0.0000000001  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.35129  normal  0.370797 
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  27.62 
 
 
233 aa  67.8  0.0000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_009523  RoseRS_4027  cyclic nucleotide-binding protein  28.8 
 
 
216 aa  68.2  0.0000000001  Roseiflexus sp. RS-1  Bacteria  normal  0.357709  normal 
 
 
-
 
NC_010524  Lcho_0755  Crp/FNR family transcriptional regulator  27.53 
 
 
222 aa  67.8  0.0000000001  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.2571 
 
 
-
 
NC_011757  Mchl_3673  transcriptional regulator, Crp/Fnr family  25.56 
 
 
254 aa  68.2  0.0000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.43296  normal 
 
 
-
 
NC_008255  CHU_1132  transcriptional regulator  26.86 
 
 
355 aa  67.8  0.0000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.99008 
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  28.32 
 
 
223 aa  67.8  0.0000000001  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  27.62 
 
 
233 aa  67.8  0.0000000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  26.78 
 
 
220 aa  66.6  0.0000000002  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  26.92 
 
 
236 aa  67  0.0000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  25.14 
 
 
225 aa  67.4  0.0000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_3227  CRP/FNR family transcriptional regulator  24 
 
 
232 aa  67  0.0000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1896  cyclic nucleotide-binding protein  30.05 
 
 
218 aa  67.4  0.0000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_0372  transcriptional regulator, Crp/Fnr family  29.36 
 
 
225 aa  67.4  0.0000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009428  Rsph17025_0968  CRP/FNR family transcriptional regulator  27.07 
 
 
233 aa  67  0.0000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_3629  Crp/FNR family transcriptional regulator  26.23 
 
 
263 aa  66.6  0.0000000003  Frankia sp. CcI3  Bacteria  normal  normal  0.332638 
 
 
-
 
NC_008025  Dgeo_0106  Crp/FNR family transcriptional regulator  28.22 
 
 
254 aa  66.6  0.0000000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_007484  Noc_1061  Crp family transcriptional regulator  24.04 
 
 
214 aa  66.2  0.0000000004  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0336611  n/a   
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  28.04 
 
 
225 aa  66.2  0.0000000004  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  25.84 
 
 
225 aa  65.9  0.0000000004  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_011830  Dhaf_1853  transcriptional regulator, Crp/Fnr family  25 
 
 
240 aa  66.2  0.0000000004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_4187  transcriptional regulator, Crp/Fnr family  25 
 
 
254 aa  65.9  0.0000000005  Methylobacterium populi BJ001  Bacteria  normal  0.338954  normal 
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  27.17 
 
 
224 aa  65.9  0.0000000005  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
NC_013131  Caci_8903  transcriptional regulator, Crp/Fnr family  27.53 
 
 
224 aa  65.9  0.0000000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4219  Crp/FNR family transcriptional regulator  25 
 
 
219 aa  65.5  0.0000000006  Polaromonas sp. JS666  Bacteria  normal  0.408304  normal 
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  27.37 
 
 
249 aa  65.5  0.0000000007  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_011831  Cagg_0349  transcriptional regulator, Crp/Fnr family  32.32 
 
 
222 aa  65.5  0.0000000007  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.00000192919 
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  26.37 
 
 
236 aa  64.7  0.0000000009  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1724  transcriptional regulator, Crp/Fnr family  25.27 
 
 
230 aa  64.7  0.000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_1101  Crp/FNR family transcriptional regulator  25.14 
 
 
246 aa  64.3  0.000000001  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
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