More than 300 homologs were found in PanDaTox collection
for query gene RPC_4410 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007925  RPC_4410  Crp/FNR family transcriptional regulator  100 
 
 
225 aa  463  1e-129  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.994375  normal  0.444525 
 
 
-
 
NC_007958  RPD_1742  cyclic nucleotide-binding  67.3 
 
 
251 aa  278  7e-74  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_2535  cyclic nucleotide-binding domain-containing protein  61.61 
 
 
228 aa  273  2.0000000000000002e-72  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4909  transcriptional regulator, Crp/Fnr family  60.95 
 
 
221 aa  251  4.0000000000000004e-66  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.385812  n/a   
 
 
-
 
NC_009485  BBta_1632  Crp/FNR family transcriptional regulator  57.87 
 
 
250 aa  248  5e-65  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6723  putative cyclic-AMP receptor-like protein  53.24 
 
 
235 aa  244  9.999999999999999e-64  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.823634  normal 
 
 
-
 
NC_011004  Rpal_4383  transcriptional regulator, Crp/Fnr family  61.14 
 
 
221 aa  241  7e-63  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.140178  n/a   
 
 
-
 
NC_007958  RPD_4082  cyclic nucleotide-binding  58.69 
 
 
220 aa  240  1e-62  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4231  Crp/FNR family transcriptional regulator  59.43 
 
 
220 aa  238  5.999999999999999e-62  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.572136 
 
 
-
 
NC_007958  RPD_1723  cyclic nucleotide-binding  58.41 
 
 
228 aa  234  7e-61  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.637067  normal 
 
 
-
 
NC_008009  Acid345_0065  Crp/FNR family transcriptional regulator  58.1 
 
 
258 aa  232  4.0000000000000004e-60  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0605636  normal 
 
 
-
 
NC_007778  RPB_3749  Crp/FNR family transcriptional regulator  58.69 
 
 
228 aa  231  6e-60  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.9168  normal 
 
 
-
 
NC_013131  Caci_2591  transcriptional regulator, Crp/Fnr family  36.09 
 
 
221 aa  100  2e-20  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.44001  normal 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  28.8 
 
 
225 aa  92.4  5e-18  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  28.8 
 
 
225 aa  92  6e-18  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  28.65 
 
 
226 aa  90.1  2e-17  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  29.44 
 
 
229 aa  89.7  3e-17  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_013037  Dfer_5316  transcriptional regulator, Crp/Fnr family  28.06 
 
 
354 aa  87.8  1e-16  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.100222 
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  28.11 
 
 
220 aa  88.2  1e-16  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  28.12 
 
 
226 aa  87  2e-16  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  28.57 
 
 
225 aa  87  2e-16  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  28.8 
 
 
225 aa  86.3  3e-16  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  30.43 
 
 
352 aa  86.3  4e-16  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  26.52 
 
 
225 aa  85.5  6e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  27.22 
 
 
225 aa  84.7  9e-16  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  29.26 
 
 
251 aa  84.3  0.000000000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  28.89 
 
 
228 aa  83.6  0.000000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  26.63 
 
 
225 aa  83.6  0.000000000000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  28.74 
 
 
224 aa  83.6  0.000000000000002  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  28.93 
 
 
225 aa  83.2  0.000000000000003  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_1132  transcriptional regulator  28.02 
 
 
355 aa  83.2  0.000000000000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.99008 
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  28.73 
 
 
224 aa  82.4  0.000000000000004  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  28.73 
 
 
224 aa  82.4  0.000000000000004  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  28.73 
 
 
224 aa  82.4  0.000000000000004  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  28.73 
 
 
224 aa  82.4  0.000000000000004  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  28.18 
 
 
224 aa  81.6  0.000000000000008  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  28.08 
 
 
247 aa  81.3  0.00000000000001  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_3553  transcriptional regulator, Crp/Fnr family  29.35 
 
 
348 aa  81.3  0.00000000000001  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.528491 
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  26.88 
 
 
226 aa  81.3  0.00000000000001  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  26.4 
 
 
242 aa  81.3  0.00000000000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_009338  Mflv_1371  CRP/FNR family transcriptional regulator  28.18 
 
 
224 aa  80.1  0.00000000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0955358 
 
 
-
 
NC_013730  Slin_1271  transcriptional regulator, Crp/Fnr family  26.79 
 
 
350 aa  79.3  0.00000000000004  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_22000  transcriptional regulator, Crp/Fnr family  26.67 
 
 
235 aa  79.3  0.00000000000004  Azotobacter vinelandii DJ  Bacteria  normal  0.457493  n/a   
 
 
-
 
NC_013172  Bfae_24470  cAMP-binding protein  28.98 
 
 
261 aa  79  0.00000000000005  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  28.19 
 
 
228 aa  79.3  0.00000000000005  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  26.55 
 
 
224 aa  78.2  0.00000000000009  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  28.5 
 
 
225 aa  77.4  0.0000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_013441  Gbro_0505  cyclic nucleotide-binding protein  26.52 
 
 
224 aa  77.4  0.0000000000002  Gordonia bronchialis DSM 43247  Bacteria  normal  0.287437  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  26.63 
 
 
226 aa  77  0.0000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  26.04 
 
 
225 aa  77  0.0000000000002  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  25.82 
 
 
228 aa  76.3  0.0000000000003  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0291  Crp/FNR family transcriptional regulator  28.05 
 
 
227 aa  75.1  0.0000000000008  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.277011  normal 
 
 
-
 
NC_009441  Fjoh_4447  CRP/FNR family transcriptional regulator  25.56 
 
 
227 aa  75.1  0.0000000000008  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1853  transcriptional regulator, Crp/Fnr family  30.34 
 
 
240 aa  74.7  0.000000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0199  Crp/FNR family transcriptional regulator  27.37 
 
 
227 aa  74.7  0.000000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  26.18 
 
 
243 aa  74.3  0.000000000001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  24.87 
 
 
236 aa  74.3  0.000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  25.41 
 
 
224 aa  74.3  0.000000000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  26.52 
 
 
224 aa  74.7  0.000000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  27.13 
 
 
223 aa  73.9  0.000000000002  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_008044  TM1040_1951  Crp/FNR family transcriptional regulator  30.05 
 
 
222 aa  73.9  0.000000000002  Ruegeria sp. TM1040  Bacteria  normal  0.861655  normal  0.0267012 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  27.66 
 
 
226 aa  73.6  0.000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_013093  Amir_0253  transcriptional regulator, Crp/Fnr family  26.52 
 
 
224 aa  73.2  0.000000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_4881  putative cyclic-AMP receptor-like protein  27.01 
 
 
281 aa  73.2  0.000000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.353478  normal  0.139273 
 
 
-
 
NC_009953  Sare_4762  Crp/FNR family transcriptional regulator  27.62 
 
 
225 aa  72.8  0.000000000004  Salinispora arenicola CNS-205  Bacteria  normal  0.900483  hitchhiker  0.0000929699 
 
 
-
 
NC_009380  Strop_4322  cyclic nucleotide-binding  27.62 
 
 
225 aa  72.8  0.000000000004  Salinispora tropica CNB-440  Bacteria  normal  normal  0.0230513 
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  29.12 
 
 
220 aa  72.4  0.000000000005  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_010814  Glov_0629  transcriptional regulator, Crp/Fnr family  29.63 
 
 
230 aa  72.4  0.000000000005  Geobacter lovleyi SZ  Bacteria  decreased coverage  0.0000285446  n/a   
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  25.54 
 
 
226 aa  72.8  0.000000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  26.67 
 
 
231 aa  72.4  0.000000000005  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  24 
 
 
236 aa  72  0.000000000007  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  28.02 
 
 
226 aa  71.6  0.000000000008  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  29.28 
 
 
236 aa  71.6  0.000000000009  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_010676  Bphyt_7045  transcriptional regulator, Crp/Fnr family  26.11 
 
 
237 aa  71.6  0.000000000009  Burkholderia phytofirmans PsJN  Bacteria  normal  0.601598  normal  0.0108856 
 
 
-
 
NC_013132  Cpin_5556  transcriptional regulator, Crp/Fnr family  26.95 
 
 
352 aa  71.2  0.00000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.487576  normal  0.0420739 
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  25.43 
 
 
226 aa  71.2  0.00000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_007952  Bxe_B0027  Crp/FNR family transcriptional regulator  25.41 
 
 
237 aa  71.6  0.00000000001  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3348  cyclic nucleotide-binding  25.46 
 
 
254 aa  70.5  0.00000000002  Methylobacterium extorquens PA1  Bacteria  normal  0.181039  normal 
 
 
-
 
NC_009656  PSPA7_0351  putative transcriptional regulator  27.17 
 
 
228 aa  70.5  0.00000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  27.92 
 
 
226 aa  70.1  0.00000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_011757  Mchl_3673  transcriptional regulator, Crp/Fnr family  25.46 
 
 
254 aa  70.9  0.00000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.43296  normal 
 
 
-
 
NC_008699  Noca_1641  cyclic nucleotide-binding  27.68 
 
 
267 aa  70.5  0.00000000002  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  24.28 
 
 
219 aa  70.1  0.00000000003  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  27.27 
 
 
225 aa  70.1  0.00000000003  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_013131  Caci_8903  transcriptional regulator, Crp/Fnr family  25.54 
 
 
224 aa  70.1  0.00000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  26.11 
 
 
226 aa  69.7  0.00000000003  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_4187  transcriptional regulator, Crp/Fnr family  24.88 
 
 
254 aa  69.7  0.00000000003  Methylobacterium populi BJ001  Bacteria  normal  0.338954  normal 
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  28.07 
 
 
228 aa  70.1  0.00000000003  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_010816  BLD_0979  cAMP-binding protein  26.37 
 
 
239 aa  69.3  0.00000000004  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1592  transcriptional regulator, Crp/Fnr family  28.04 
 
 
228 aa  68.9  0.00000000005  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  28.73 
 
 
236 aa  68.9  0.00000000005  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_012791  Vapar_3129  transcriptional regulator, Crp/Fnr family  30.73 
 
 
224 aa  68.9  0.00000000006  Variovorax paradoxus S110  Bacteria  normal  0.0256895  n/a   
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  28.19 
 
 
224 aa  68.6  0.00000000007  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_010424  Daud_0783  CRP/FNR family transcriptional regulator  28.57 
 
 
217 aa  68.6  0.00000000007  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1691  CRP/FNR family transcriptional regulator  26.46 
 
 
232 aa  68.6  0.00000000007  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00272653  normal  0.637065 
 
 
-
 
NC_002950  PG0396  Crp/FNR family transcriptional regulator  28.81 
 
 
232 aa  68.6  0.00000000008  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  25.82 
 
 
236 aa  68.2  0.0000000001  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_007484  Noc_1061  Crp family transcriptional regulator  25.64 
 
 
214 aa  67.8  0.0000000001  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0336611  n/a   
 
 
-
 
NC_013216  Dtox_2750  transcriptional regulator, Crp/Fnr family  22.95 
 
 
222 aa  67.8  0.0000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.0000000354449  normal  0.602467 
 
 
-
 
NC_009338  Mflv_4388  CRP/FNR family transcriptional regulator  24.26 
 
 
225 aa  67.8  0.0000000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
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