More than 300 homologs were found in PanDaTox collection
for query gene RPD_1742 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007958  RPD_1742  cyclic nucleotide-binding  100 
 
 
251 aa  519  1e-146  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4410  Crp/FNR family transcriptional regulator  67.3 
 
 
225 aa  279  3e-74  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.994375  normal  0.444525 
 
 
-
 
NC_007964  Nham_2535  cyclic nucleotide-binding domain-containing protein  61.68 
 
 
228 aa  249  3e-65  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6723  putative cyclic-AMP receptor-like protein  48.67 
 
 
235 aa  230  1e-59  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.823634  normal 
 
 
-
 
NC_009485  BBta_1632  Crp/FNR family transcriptional regulator  56.22 
 
 
250 aa  229  2e-59  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3749  Crp/FNR family transcriptional regulator  58.57 
 
 
228 aa  228  5e-59  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.9168  normal 
 
 
-
 
NC_011004  Rpal_4383  transcriptional regulator, Crp/Fnr family  57.55 
 
 
221 aa  226  3e-58  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.140178  n/a   
 
 
-
 
NC_011004  Rpal_4909  transcriptional regulator, Crp/Fnr family  55.71 
 
 
221 aa  226  3e-58  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.385812  n/a   
 
 
-
 
NC_008009  Acid345_0065  Crp/FNR family transcriptional regulator  55.14 
 
 
258 aa  220  1.9999999999999999e-56  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0605636  normal 
 
 
-
 
NC_007958  RPD_1723  cyclic nucleotide-binding  55.24 
 
 
228 aa  216  2e-55  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.637067  normal 
 
 
-
 
NC_007958  RPD_4082  cyclic nucleotide-binding  53.59 
 
 
220 aa  209  4e-53  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4231  Crp/FNR family transcriptional regulator  51.16 
 
 
220 aa  204  2e-51  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.572136 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  33.15 
 
 
225 aa  97.4  2e-19  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  30.22 
 
 
225 aa  94.7  1e-18  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_2591  transcriptional regulator, Crp/Fnr family  34.66 
 
 
221 aa  92.8  5e-18  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.44001  normal 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  29.67 
 
 
225 aa  92.4  7e-18  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  28.33 
 
 
225 aa  87.4  2e-16  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  29.69 
 
 
352 aa  87.8  2e-16  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  32.96 
 
 
224 aa  87  2e-16  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  31.67 
 
 
228 aa  87.4  2e-16  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  34.43 
 
 
236 aa  86.7  3e-16  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  29.55 
 
 
225 aa  86.7  3e-16  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  31.03 
 
 
224 aa  85.9  5e-16  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  27.78 
 
 
226 aa  84.7  0.000000000000001  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  30 
 
 
228 aa  84.3  0.000000000000002  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  28.81 
 
 
220 aa  84.3  0.000000000000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  29.73 
 
 
226 aa  84  0.000000000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_008044  TM1040_1951  Crp/FNR family transcriptional regulator  30.77 
 
 
222 aa  84.3  0.000000000000002  Ruegeria sp. TM1040  Bacteria  normal  0.861655  normal  0.0267012 
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  28.89 
 
 
228 aa  84  0.000000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  27.68 
 
 
242 aa  83.2  0.000000000000004  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_009380  Strop_3269  CRP/FNR family transcriptional regulator  27.14 
 
 
230 aa  82.8  0.000000000000004  Salinispora tropica CNB-440  Bacteria  normal  0.883713  normal 
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  29.03 
 
 
247 aa  82.4  0.000000000000005  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_1132  transcriptional regulator  28.42 
 
 
355 aa  82.4  0.000000000000006  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.99008 
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  32.96 
 
 
225 aa  82.4  0.000000000000006  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_009953  Sare_3499  Crp/FNR family transcriptional regulator  28.25 
 
 
230 aa  81.3  0.00000000000001  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00506626 
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  24.46 
 
 
236 aa  81.3  0.00000000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  29.21 
 
 
225 aa  81.3  0.00000000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_011830  Dhaf_1853  transcriptional regulator, Crp/Fnr family  27.59 
 
 
240 aa  80.1  0.00000000000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0199  Crp/FNR family transcriptional regulator  29.51 
 
 
227 aa  79  0.00000000000007  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  26.67 
 
 
225 aa  78.2  0.0000000000001  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  27.05 
 
 
225 aa  78.2  0.0000000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  29.17 
 
 
243 aa  77.8  0.0000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_013037  Dfer_5316  transcriptional regulator, Crp/Fnr family  25.77 
 
 
354 aa  77.4  0.0000000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.100222 
 
 
-
 
NC_013947  Snas_5052  transcriptional regulator, Crp/Fnr family  26.4 
 
 
228 aa  77.8  0.0000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.267336 
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  27.89 
 
 
226 aa  76.6  0.0000000000003  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B0027  Crp/FNR family transcriptional regulator  26.96 
 
 
237 aa  76.6  0.0000000000003  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  30.94 
 
 
236 aa  76.6  0.0000000000003  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_010676  Bphyt_7045  transcriptional regulator, Crp/Fnr family  27.37 
 
 
237 aa  77  0.0000000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  0.601598  normal  0.0108856 
 
 
-
 
NC_009511  Swit_3029  CRP/FNR family transcriptional regulator  28.1 
 
 
228 aa  76.3  0.0000000000004  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_0106  Crp/FNR family transcriptional regulator  28.27 
 
 
254 aa  75.5  0.0000000000007  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A1691  CRP/FNR family transcriptional regulator  28.29 
 
 
232 aa  75.5  0.0000000000007  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00272653  normal  0.637065 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  27.64 
 
 
231 aa  75.5  0.0000000000008  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  28.33 
 
 
226 aa  75.1  0.0000000000009  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  25.65 
 
 
229 aa  75.1  0.0000000000009  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_010816  BLD_0979  cAMP-binding protein  30.81 
 
 
239 aa  74.7  0.000000000001  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  27.22 
 
 
226 aa  75.1  0.000000000001  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_013411  GYMC61_1592  transcriptional regulator, Crp/Fnr family  28.12 
 
 
228 aa  73.9  0.000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013730  Slin_1271  transcriptional regulator, Crp/Fnr family  27.68 
 
 
350 aa  73.9  0.000000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  29.83 
 
 
224 aa  74.3  0.000000000002  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3553  transcriptional regulator, Crp/Fnr family  27.81 
 
 
348 aa  73.6  0.000000000003  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.528491 
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  30.05 
 
 
249 aa  73.6  0.000000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_008740  Maqu_3550  cAMP-regulatory protein  25.41 
 
 
217 aa  73.2  0.000000000004  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  26.11 
 
 
226 aa  72.4  0.000000000006  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_009441  Fjoh_4447  CRP/FNR family transcriptional regulator  26.7 
 
 
227 aa  72.8  0.000000000006  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_1371  CRP/FNR family transcriptional regulator  28.49 
 
 
224 aa  72.8  0.000000000006  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0955358 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  25 
 
 
228 aa  72.4  0.000000000006  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3071  transcriptional regulator, Crp/Fnr family  28.25 
 
 
224 aa  72.4  0.000000000006  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00222127  n/a   
 
 
-
 
NC_011884  Cyan7425_0755  transcriptional regulator, Crp/Fnr family  30.37 
 
 
223 aa  72.4  0.000000000007  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.125698 
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  28.49 
 
 
224 aa  72  0.000000000008  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_007777  Francci3_3629  Crp/FNR family transcriptional regulator  25.14 
 
 
263 aa  72  0.000000000009  Frankia sp. CcI3  Bacteria  normal  normal  0.332638 
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  28.64 
 
 
236 aa  72  0.000000000009  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  30.39 
 
 
236 aa  71.6  0.00000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  32.28 
 
 
254 aa  71.6  0.00000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_012560  Avin_22000  transcriptional regulator, Crp/Fnr family  27.22 
 
 
235 aa  71.6  0.00000000001  Azotobacter vinelandii DJ  Bacteria  normal  0.457493  n/a   
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  26.82 
 
 
225 aa  71.6  0.00000000001  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5556  transcriptional regulator, Crp/Fnr family  26.82 
 
 
352 aa  70.5  0.00000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.487576  normal  0.0420739 
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  27.93 
 
 
224 aa  70.9  0.00000000002  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  27.93 
 
 
224 aa  70.9  0.00000000002  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  30.22 
 
 
236 aa  70.9  0.00000000002  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_009921  Franean1_1101  Crp/FNR family transcriptional regulator  25.68 
 
 
246 aa  70.9  0.00000000002  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  24.76 
 
 
236 aa  70.9  0.00000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  27.93 
 
 
224 aa  70.9  0.00000000002  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  28 
 
 
225 aa  70.5  0.00000000003  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_0505  cyclic nucleotide-binding protein  28.49 
 
 
224 aa  70.1  0.00000000003  Gordonia bronchialis DSM 43247  Bacteria  normal  0.287437  n/a   
 
 
-
 
NC_009972  Haur_0049  Crp/FNR family transcriptional regulator  27.49 
 
 
252 aa  70.5  0.00000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.422683  n/a   
 
 
-
 
NC_013131  Caci_8903  transcriptional regulator, Crp/Fnr family  27.32 
 
 
224 aa  70.5  0.00000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  26.59 
 
 
226 aa  70.1  0.00000000003  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_013456  VEA_003082  transcriptional regulator Crp/Fnr family  27.89 
 
 
231 aa  69.7  0.00000000004  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00863529  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  29.67 
 
 
231 aa  69.3  0.00000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  26.92 
 
 
226 aa  69.3  0.00000000006  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  25.38 
 
 
251 aa  69.3  0.00000000006  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_009656  PSPA7_0351  putative transcriptional regulator  27.47 
 
 
228 aa  68.9  0.00000000007  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0629  transcriptional regulator, Crp/Fnr family  29.1 
 
 
230 aa  68.9  0.00000000007  Geobacter lovleyi SZ  Bacteria  decreased coverage  0.0000285446  n/a   
 
 
-
 
NC_007413  Ava_3283  Crp/FNR family transcriptional regulator  31.05 
 
 
223 aa  68.9  0.00000000008  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_2023  Crp/FNR family transcriptional regulator  31.09 
 
 
221 aa  68.6  0.00000000008  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0496812 
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  29.12 
 
 
236 aa  68.6  0.00000000009  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  26.82 
 
 
224 aa  68.6  0.0000000001  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_013216  Dtox_1944  transcriptional regulator, Crp/Fnr family  29.67 
 
 
227 aa  67.8  0.0000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  30.81 
 
 
236 aa  68.2  0.0000000001  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_010424  Daud_0783  CRP/FNR family transcriptional regulator  28.42 
 
 
217 aa  68.6  0.0000000001  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
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