More than 300 homologs were found in PanDaTox collection
for query gene RPD_1723 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007958  RPD_1723  cyclic nucleotide-binding  100 
 
 
228 aa  465  9.999999999999999e-131  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.637067  normal 
 
 
-
 
NC_007778  RPB_3749  Crp/FNR family transcriptional regulator  86.67 
 
 
228 aa  390  1e-107  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.9168  normal 
 
 
-
 
NC_011004  Rpal_4383  transcriptional regulator, Crp/Fnr family  66.06 
 
 
221 aa  279  2e-74  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.140178  n/a   
 
 
-
 
NC_007925  RPC_4410  Crp/FNR family transcriptional regulator  58.41 
 
 
225 aa  235  5.0000000000000005e-61  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.994375  normal  0.444525 
 
 
-
 
NC_011004  Rpal_4909  transcriptional regulator, Crp/Fnr family  55.61 
 
 
221 aa  219  1.9999999999999999e-56  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.385812  n/a   
 
 
-
 
NC_007964  Nham_2535  cyclic nucleotide-binding domain-containing protein  55.05 
 
 
228 aa  219  3e-56  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1742  cyclic nucleotide-binding  55.24 
 
 
251 aa  215  4e-55  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6723  putative cyclic-AMP receptor-like protein  51.89 
 
 
235 aa  210  2e-53  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.823634  normal 
 
 
-
 
NC_007958  RPD_4082  cyclic nucleotide-binding  52.78 
 
 
220 aa  202  3e-51  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4231  Crp/FNR family transcriptional regulator  52.56 
 
 
220 aa  199  3e-50  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.572136 
 
 
-
 
NC_009485  BBta_1632  Crp/FNR family transcriptional regulator  50.23 
 
 
250 aa  199  3.9999999999999996e-50  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_0065  Crp/FNR family transcriptional regulator  49.77 
 
 
258 aa  179  2e-44  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0605636  normal 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  31.25 
 
 
224 aa  86.7  3e-16  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_2591  transcriptional regulator, Crp/Fnr family  32.14 
 
 
221 aa  85.9  5e-16  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.44001  normal 
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  30 
 
 
226 aa  85.5  6e-16  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_013730  Slin_3553  transcriptional regulator, Crp/Fnr family  29.13 
 
 
348 aa  84.3  0.000000000000001  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.528491 
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  29.79 
 
 
226 aa  83.2  0.000000000000003  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  30.22 
 
 
352 aa  81.6  0.00000000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  29.14 
 
 
225 aa  79.3  0.00000000000004  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  28.89 
 
 
220 aa  79.3  0.00000000000004  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_013037  Dfer_5316  transcriptional regulator, Crp/Fnr family  28.72 
 
 
354 aa  79.3  0.00000000000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.100222 
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  29.67 
 
 
251 aa  77.4  0.0000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  27.32 
 
 
225 aa  77.4  0.0000000000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  28.57 
 
 
226 aa  76.6  0.0000000000003  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  27.86 
 
 
226 aa  76.3  0.0000000000003  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  28.89 
 
 
225 aa  75.9  0.0000000000005  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  28.34 
 
 
228 aa  75.5  0.0000000000006  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  28.89 
 
 
225 aa  75.5  0.0000000000006  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  28.09 
 
 
226 aa  75.5  0.0000000000007  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  29.94 
 
 
231 aa  75.1  0.0000000000008  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  29.35 
 
 
220 aa  74.3  0.000000000001  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  27.01 
 
 
226 aa  73.6  0.000000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  26.67 
 
 
224 aa  74.3  0.000000000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  29.07 
 
 
228 aa  73.6  0.000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_013730  Slin_1271  transcriptional regulator, Crp/Fnr family  27.01 
 
 
350 aa  73.9  0.000000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  30.39 
 
 
236 aa  73.9  0.000000000002  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  31.15 
 
 
229 aa  72.4  0.000000000006  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  29.07 
 
 
242 aa  72.4  0.000000000006  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_009380  Strop_3269  CRP/FNR family transcriptional regulator  25.7 
 
 
230 aa  72  0.000000000006  Salinispora tropica CNB-440  Bacteria  normal  0.883713  normal 
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  28.41 
 
 
225 aa  72  0.000000000007  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  26.86 
 
 
228 aa  71.2  0.00000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  25.99 
 
 
225 aa  71.6  0.00000000001  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  27.22 
 
 
225 aa  71.2  0.00000000001  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_3499  Crp/FNR family transcriptional regulator  25.7 
 
 
230 aa  70.9  0.00000000002  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00506626 
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  28.9 
 
 
236 aa  70.9  0.00000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  29.03 
 
 
236 aa  70.9  0.00000000002  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  29.14 
 
 
225 aa  70.9  0.00000000002  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_009504  BOV_A0257  transcriptional regulator NnrR  27.41 
 
 
232 aa  70.1  0.00000000003  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  28.09 
 
 
225 aa  70.1  0.00000000003  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  28.49 
 
 
236 aa  69.7  0.00000000003  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  28 
 
 
247 aa  69.7  0.00000000004  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1119  catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein)  28.43 
 
 
222 aa  69.3  0.00000000005  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.106899 
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  28.96 
 
 
226 aa  69.3  0.00000000005  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6822  Crp/FNR family transcriptional regulator  27.75 
 
 
239 aa  69.3  0.00000000005  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5556  transcriptional regulator, Crp/Fnr family  27.98 
 
 
352 aa  68.9  0.00000000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.487576  normal  0.0420739 
 
 
-
 
NC_011830  Dhaf_3158  transcriptional regulator, Crp/Fnr family  25.71 
 
 
223 aa  68.9  0.00000000006  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  27.43 
 
 
226 aa  68.6  0.00000000008  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  25.42 
 
 
227 aa  68.6  0.00000000008  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0281  transcriptional regulator NnrR  26.02 
 
 
232 aa  67.8  0.0000000001  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  29.59 
 
 
246 aa  68.2  0.0000000001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_011761  AFE_0857  transcriptional regulator, Crp/Fnr family  29.59 
 
 
229 aa  67.8  0.0000000001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  29.71 
 
 
229 aa  67.8  0.0000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_010084  Bmul_0755  Crp/FNR family transcriptional regulator  27.93 
 
 
235 aa  67.8  0.0000000001  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.027549  normal  0.149867 
 
 
-
 
NC_008255  CHU_1132  transcriptional regulator  23.63 
 
 
355 aa  68.2  0.0000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.99008 
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  27.17 
 
 
236 aa  67.8  0.0000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  27.68 
 
 
224 aa  67  0.0000000002  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  29.94 
 
 
234 aa  67.4  0.0000000002  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  27.75 
 
 
240 aa  67.4  0.0000000002  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  26.97 
 
 
225 aa  67.4  0.0000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_2565  Crp/FNR family transcriptional regulator  25.41 
 
 
235 aa  66.6  0.0000000003  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0695171  normal  0.0307054 
 
 
-
 
NC_010320  Teth514_1376  CRP/FNR family transcriptional regulator  29.06 
 
 
228 aa  66.6  0.0000000003  Thermoanaerobacter sp. X514  Bacteria  normal  0.271211  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  29.47 
 
 
239 aa  66.2  0.0000000003  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_008789  Hhal_0917  CRP/FNR family transcriptional regulator  27.32 
 
 
254 aa  67  0.0000000003  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_5052  transcriptional regulator, Crp/Fnr family  24.74 
 
 
228 aa  66.6  0.0000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.267336 
 
 
-
 
NC_008060  Bcen_1929  Crp/FNR family transcriptional regulator  25.41 
 
 
235 aa  66.6  0.0000000003  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.589711  n/a   
 
 
-
 
NC_010676  Bphyt_7045  transcriptional regulator, Crp/Fnr family  27.72 
 
 
237 aa  67  0.0000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  0.601598  normal  0.0108856 
 
 
-
 
NC_008542  Bcen2424_2541  Crp/FNR family transcriptional regulator  25.41 
 
 
235 aa  66.6  0.0000000003  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.000812643  n/a   
 
 
-
 
NC_007406  Nwi_0675  cyclic nucleotide-binding protein  25.25 
 
 
240 aa  66.2  0.0000000004  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.35129  normal  0.370797 
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  27.33 
 
 
236 aa  66.2  0.0000000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_010816  BLD_0979  cAMP-binding protein  27.62 
 
 
239 aa  66.2  0.0000000004  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_2459  Crp/FNR family transcriptional regulator  25.81 
 
 
235 aa  66.2  0.0000000004  Burkholderia ambifaria MC40-6  Bacteria  normal  hitchhiker  0.0000341213 
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  27.59 
 
 
224 aa  65.9  0.0000000005  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  24.35 
 
 
236 aa  65.9  0.0000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  27.18 
 
 
232 aa  65.9  0.0000000005  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  28 
 
 
226 aa  65.5  0.0000000006  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_008825  Mpe_A1691  CRP/FNR family transcriptional regulator  26.09 
 
 
232 aa  65.5  0.0000000006  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00272653  normal  0.637065 
 
 
-
 
NC_007510  Bcep18194_A5872  Crp/FNR family transcriptional regulator  26.26 
 
 
235 aa  65.5  0.0000000007  Burkholderia sp. 383  Bacteria  normal  0.142608  normal  0.264846 
 
 
-
 
NC_007777  Francci3_2741  cyclic nucleotide-binding domain-containing protein  28.24 
 
 
225 aa  65.5  0.0000000007  Frankia sp. CcI3  Bacteria  normal  normal  0.705936 
 
 
-
 
NC_009668  Oant_4381  CRP/FNR family transcriptional regulator  26.47 
 
 
231 aa  65.1  0.0000000009  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  26.14 
 
 
225 aa  64.3  0.000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_011726  PCC8801_2058  transcriptional regulator, Crp/Fnr family  31.77 
 
 
225 aa  64.7  0.000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009441  Fjoh_4447  CRP/FNR family transcriptional regulator  22.83 
 
 
227 aa  64.7  0.000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  22.16 
 
 
219 aa  64.3  0.000000001  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_010424  Daud_0783  CRP/FNR family transcriptional regulator  27.98 
 
 
217 aa  65.1  0.000000001  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_2082  transcriptional regulator, Crp/Fnr family  31.77 
 
 
225 aa  64.7  0.000000001  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  28.09 
 
 
225 aa  64.7  0.000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_011757  Mchl_3673  transcriptional regulator, Crp/Fnr family  25.52 
 
 
254 aa  64.7  0.000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.43296  normal 
 
 
-
 
NC_008390  Bamb_2589  Crp/FNR family transcriptional regulator  25.81 
 
 
235 aa  64.7  0.000000001  Burkholderia ambifaria AMMD  Bacteria  normal  0.0679634  n/a   
 
 
-
 
NC_010172  Mext_3348  cyclic nucleotide-binding  25.52 
 
 
254 aa  64.3  0.000000002  Methylobacterium extorquens PA1  Bacteria  normal  0.181039  normal 
 
 
-
 
NC_007498  Pcar_2562  cyclic AMP receptor protein  28.86 
 
 
222 aa  64.3  0.000000002  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.553837  n/a   
 
 
-
 
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