More than 300 homologs were found in PanDaTox collection
for query gene RPD_4400 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_5300  putative periplasmic substrate binding protein  92.11 
 
 
397 aa  730    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.401613  n/a   
 
 
-
 
NC_007778  RPB_4690  extracellular ligand-binding receptor  91.18 
 
 
397 aa  757    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0074  putative branched chain amino acid periplasmic binding protein of ABC transporter  89.2 
 
 
399 aa  718    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_4400  putative branched chain amino acid periplasmic binding protein of ABC transporter  100 
 
 
397 aa  805    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0682  putative branched chain amino acid binding protein  82.62 
 
 
395 aa  670    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.246685  normal  0.442954 
 
 
-
 
NC_009504  BOV_A0894  putative branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  72.65 
 
 
401 aa  577  1.0000000000000001e-163  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0953  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative  72.39 
 
 
401 aa  576  1.0000000000000001e-163  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3789  Leu/Ile/Val-binding family protein  70.18 
 
 
409 aa  577  1.0000000000000001e-163  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.710609 
 
 
-
 
NC_010511  M446_1790  Leu/Ile/Val-binding family protein  72.12 
 
 
417 aa  571  1.0000000000000001e-162  Methylobacterium sp. 4-46  Bacteria  normal  0.322977  normal  0.0207356 
 
 
-
 
NC_011894  Mnod_0709  Leu/Ile/Val-binding family protein  72.39 
 
 
406 aa  572  1.0000000000000001e-162  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.195015  n/a   
 
 
-
 
NC_009667  Oant_1402  branched-chain amino acid ABC transporter, periplasmic amino acid- binding protein  71.97 
 
 
401 aa  573  1.0000000000000001e-162  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_012858  Rleg_6729  Extracellular ligand-binding receptor  69.92 
 
 
401 aa  567  1e-160  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011366  Rleg2_5823  putative branched-chain amino acid ABC transporter, substrate-binding protein  69.41 
 
 
401 aa  566  1e-160  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.281514  normal  0.102648 
 
 
-
 
NC_009636  Smed_2864  putative periplasmic binding ABC transporter protein  69.44 
 
 
401 aa  566  1e-160  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.581336 
 
 
-
 
NC_007494  RSP_3297  ABC branched-chain amino acid transporter, periplasmic binding protein  70.08 
 
 
400 aa  557  1e-157  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.300791  n/a   
 
 
-
 
NC_009050  Rsph17029_4029  ABC branched-chain amino acid transporter, periplasmic binding protein  69.54 
 
 
400 aa  554  1e-156  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_1717  ABC branched-chain amino acid transporter, periplasmic binding protein  65.99 
 
 
399 aa  545  1e-154  Paracoccus denitrificans PD1222  Bacteria  normal  0.620152  normal 
 
 
-
 
NC_009429  Rsph17025_3292  hypothetical protein  67.39 
 
 
400 aa  543  1e-153  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.406168  normal 
 
 
-
 
NC_007778  RPB_3199  extracellular ligand-binding receptor  58.82 
 
 
405 aa  485  1e-136  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.206752  normal  0.636131 
 
 
-
 
NC_011004  Rpal_2487  Extracellular ligand-binding receptor  59.69 
 
 
404 aa  486  1e-136  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.589907  n/a   
 
 
-
 
NC_007958  RPD_2256  extracellular ligand-binding receptor  60.05 
 
 
403 aa  483  1e-135  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.777349  normal  0.277076 
 
 
-
 
NC_009485  BBta_5091  putative branched-chain amino acid ABC transporter, substrate-binding protein  57.64 
 
 
416 aa  468  1.0000000000000001e-131  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.339692  normal  0.603773 
 
 
-
 
NC_009717  Xaut_5024  extracellular ligand-binding receptor  58.33 
 
 
400 aa  469  1.0000000000000001e-131  Xanthobacter autotrophicus Py2  Bacteria  normal  0.151241  normal 
 
 
-
 
NC_009720  Xaut_1437  extracellular ligand-binding receptor  59.9 
 
 
401 aa  468  9.999999999999999e-131  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.694305 
 
 
-
 
NC_003295  RSc3342  putative substrate-binding periplasmic (PBP) ABC transporter protein  54.73 
 
 
402 aa  452  1.0000000000000001e-126  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_1578  ABC transporter substrate-binding protein  58.57 
 
 
402 aa  453  1.0000000000000001e-126  Xanthobacter autotrophicus Py2  Bacteria  normal  0.803505  normal 
 
 
-
 
NC_007348  Reut_B3887  ureA/short-chain amide ABC transporter  55.88 
 
 
413 aa  446  1.0000000000000001e-124  Ralstonia eutropha JMP134  Bacteria  normal  0.0891482  n/a   
 
 
-
 
NC_007973  Rmet_1640  putative UreA/short-chain amide ABC transporter  56.95 
 
 
412 aa  447  1.0000000000000001e-124  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.000640664  normal 
 
 
-
 
NC_010682  Rpic_3537  putative substrate-binding periplasmic (PBP) ABC transporter protein  53.94 
 
 
402 aa  442  1e-123  Ralstonia pickettii 12J  Bacteria  normal  0.277166  normal  0.0827229 
 
 
-
 
NC_009485  BBta_6215  putative ABC branched-chain amino transporter, periplasmic binding protein  59.52 
 
 
403 aa  442  1e-123  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.947625  normal 
 
 
-
 
NC_012856  Rpic12D_3211  Extracellular ligand-binding receptor  53.94 
 
 
402 aa  442  1e-123  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_3518  extracellular ligand-binding receptor  54.48 
 
 
402 aa  442  1e-123  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.36456 
 
 
-
 
NC_010511  M446_6250  ABC transporter substrate-binding protein  57.91 
 
 
413 aa  442  1e-123  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0435582 
 
 
-
 
NC_011894  Mnod_7057  Extracellular ligand-binding receptor  56.6 
 
 
420 aa  441  1e-123  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3120  putative substrate-binding periplasmic (pbp) ABC transporter protein  54.66 
 
 
400 aa  438  9.999999999999999e-123  Acidovorax sp. JS42  Bacteria  normal  0.347887  normal 
 
 
-
 
NC_007347  Reut_A3369  extracellular ligand-binding receptor  53.65 
 
 
402 aa  439  9.999999999999999e-123  Ralstonia eutropha JMP134  Bacteria  normal  0.998438  n/a   
 
 
-
 
NC_007651  BTH_I3329  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  54.14 
 
 
398 aa  439  9.999999999999999e-123  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2466  Extracellular ligand-binding receptor  54.66 
 
 
400 aa  439  9.999999999999999e-123  Acidovorax ebreus TPSY  Bacteria  normal  0.469696  n/a   
 
 
-
 
NC_010551  BamMC406_0087  extracellular ligand-binding receptor  56.72 
 
 
399 aa  439  9.999999999999999e-123  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0356646  normal 
 
 
-
 
NC_011894  Mnod_3119  Extracellular ligand-binding receptor  55.95 
 
 
403 aa  440  9.999999999999999e-123  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.741733  n/a   
 
 
-
 
NC_008390  Bamb_0076  extracellular ligand-binding receptor  56.72 
 
 
399 aa  438  9.999999999999999e-123  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_0486  substrate-binding protein  57.91 
 
 
401 aa  437  1e-121  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2936  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  55.05 
 
 
398 aa  436  1e-121  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_4065  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  55.05 
 
 
398 aa  437  1e-121  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0198  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  55.05 
 
 
398 aa  437  1e-121  Burkholderia pseudomallei 1710b  Bacteria  normal  0.352006  n/a   
 
 
-
 
NC_009074  BURPS668_3991  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  55.05 
 
 
398 aa  437  1e-121  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_5530  putative ABC branched-chain amino transporter, periplasmic binding protein  54.91 
 
 
401 aa  436  1e-121  Methylobacterium sp. 4-46  Bacteria  normal  0.460998  normal 
 
 
-
 
NC_011004  Rpal_3503  putative ABC transporter, substrate binding protein  57.88 
 
 
408 aa  434  1e-121  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.10294  n/a   
 
 
-
 
NC_008836  BMA10229_A1607  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  55.05 
 
 
392 aa  436  1e-121  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3375  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  55.05 
 
 
398 aa  436  1e-121  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0103  branched chain amino acid ABC transporter periplasmic ligand-binding protein  55.38 
 
 
399 aa  432  1e-120  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.32797  normal 
 
 
-
 
NC_007510  Bcep18194_A3267  branched chain amino acid ABC transporter periplasmic ligand-binding protein  55.38 
 
 
399 aa  433  1e-120  Burkholderia sp. 383  Bacteria  normal  normal  0.275506 
 
 
-
 
NC_010084  Bmul_0085  branched chain amino acid ABC transporter periplasmic ligand-binding protein  55.11 
 
 
399 aa  432  1e-120  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.56224  normal 
 
 
-
 
NC_010511  M446_1336  extracellular ligand-binding receptor  56.2 
 
 
400 aa  434  1e-120  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.116449 
 
 
-
 
NC_011894  Mnod_3279  Extracellular ligand-binding receptor  56.68 
 
 
400 aa  434  1e-120  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.463071  n/a   
 
 
-
 
NC_011894  Mnod_2526  ABC transporter substrate-binding protein  55.76 
 
 
411 aa  432  1e-120  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.779779  n/a   
 
 
-
 
NC_008060  Bcen_2970  branched chain amino acid ABC transporter periplasmic ligand-binding protein  55.65 
 
 
399 aa  433  1e-120  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0085  branched chain amino acid ABC transporter periplasmic ligand-binding protein  55.65 
 
 
399 aa  433  1e-120  Burkholderia cenocepacia HI2424  Bacteria  normal  0.782241  n/a   
 
 
-
 
NC_008752  Aave_1282  extracellular ligand-binding receptor  54.66 
 
 
406 aa  433  1e-120  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0780459  normal  0.651455 
 
 
-
 
NC_010505  Mrad2831_0057  extracellular ligand-binding receptor  56.6 
 
 
405 aa  434  1e-120  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.652717  normal 
 
 
-
 
NC_011894  Mnod_5117  putative UreA/short-chain amide ABC transporter  58.18 
 
 
404 aa  429  1e-119  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007336  Reut_C6432  extracellular ligand-binding receptor  58.18 
 
 
407 aa  430  1e-119  Ralstonia eutropha JMP134  Bacteria  hitchhiker  0.00470186  n/a   
 
 
-
 
NC_011894  Mnod_3421  ABC transporter substrate-binding protein  52.3 
 
 
406 aa  428  1e-119  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3913  Extracellular ligand-binding receptor  52.51 
 
 
404 aa  431  1e-119  Burkholderia phytofirmans PsJN  Bacteria  normal  0.956199  normal 
 
 
-
 
NC_007951  Bxe_A0019  branched chain amino acid ABC transporter periplasmic ligand-binding protein  52.26 
 
 
404 aa  431  1e-119  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0275  putative ureA/short-chain amide ABC transporter  55.47 
 
 
401 aa  431  1e-119  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.325884 
 
 
-
 
NC_007964  Nham_1674  ABC transporter substrate-binding protein  55.41 
 
 
409 aa  429  1e-119  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_4022  extracellular ligand-binding receptor  54.2 
 
 
404 aa  431  1e-119  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.339015  normal  0.405471 
 
 
-
 
NC_011662  Tmz1t_1377  ABC transporter substrate-binding protein  52.75 
 
 
404 aa  425  1e-118  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_3757  ABC transporter substrate-binding protein  54.77 
 
 
409 aa  425  1e-118  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2465  Extracellular ligand-binding receptor  53.83 
 
 
398 aa  427  1e-118  Acidovorax ebreus TPSY  Bacteria  normal  0.357174  n/a   
 
 
-
 
NC_010524  Lcho_3593  putative ABC transporter substrate binding protein  54.55 
 
 
403 aa  426  1e-118  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.636574 
 
 
-
 
NC_008782  Ajs_3119  extracellular ligand-binding receptor  53.63 
 
 
398 aa  427  1e-118  Acidovorax sp. JS42  Bacteria  normal  0.125075  normal 
 
 
-
 
NC_007643  Rru_A3303  amide-urea binding protein  52.14 
 
 
404 aa  424  1e-117  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.219547  n/a   
 
 
-
 
NC_007778  RPB_2450  urea/short-chain binding protein of ABC transporter  55.96 
 
 
408 aa  422  1e-117  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.045034  normal  0.258523 
 
 
-
 
NC_009485  BBta_7539  putative ABC transporter (substrate binding protein)  56.12 
 
 
394 aa  422  1e-117  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011892  Mnod_8470  ABC-type branched-chain amino acid transport systems, periplasmic component  50.76 
 
 
411 aa  423  1e-117  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.481667  n/a   
 
 
-
 
NC_010511  M446_5573  branched chain amino acid ABC transporter periplasmic ligand-binding protein  52.55 
 
 
396 aa  424  1e-117  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_4075  ABC-type transporter, periplasmic component  53.15 
 
 
404 aa  421  1e-116  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.624367 
 
 
-
 
NC_010622  Bphy_3047  extracellular ligand-binding receptor  52.52 
 
 
404 aa  421  1e-116  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_3779  putative ABC transporter, substrate binding protein  55.7 
 
 
408 aa  419  1e-116  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_2999  putative urea/short-chain binding protein of ABC transporter  55.44 
 
 
408 aa  421  1e-116  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0873398  normal  0.403324 
 
 
-
 
NC_009379  Pnuc_0008  extracellular ligand-binding receptor  54.72 
 
 
400 aa  419  1e-116  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.0939525  n/a   
 
 
-
 
NC_008752  Aave_1283  putative substrate-binding periplasmic (pbp) ABC transporter protein  54.84 
 
 
401 aa  418  1e-116  Acidovorax citrulli AAC00-1  Bacteria  normal  0.154147  normal 
 
 
-
 
NC_010623  Bphy_4932  extracellular ligand-binding receptor  50.5 
 
 
409 aa  419  1e-116  Burkholderia phymatum STM815  Bacteria  normal  0.350034  normal 
 
 
-
 
NC_010505  Mrad2831_1936  extracellular ligand-binding receptor  55.5 
 
 
409 aa  420  1e-116  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0141282 
 
 
-
 
NC_011992  Dtpsy_3122  Extracellular ligand-binding receptor  52.66 
 
 
419 aa  421  1e-116  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1298  putative ABC branched-chain amino transporter, periplasmic binding protein  53.23 
 
 
419 aa  417  9.999999999999999e-116  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_4079  ABC-type branched-chain amino acid transport system, periplasmic component  50.93 
 
 
405 aa  417  9.999999999999999e-116  Xanthobacter autotrophicus Py2  Bacteria  normal  0.23084  normal 
 
 
-
 
NC_007760  Adeh_2137  ABC branched-chain amino acid transporter, periplasmic ligand biinding protein  54.28 
 
 
404 aa  416  9.999999999999999e-116  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0554  ureA/short-chain amide ABC transporter  55.88 
 
 
402 aa  417  9.999999999999999e-116  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.930825  normal  0.0786148 
 
 
-
 
NC_011894  Mnod_4450  Extracellular ligand-binding receptor  57.91 
 
 
401 aa  417  9.999999999999999e-116  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.378958  n/a   
 
 
-
 
NC_010531  Pnec_0008  Extracellular ligand-binding receptor  50.99 
 
 
408 aa  416  9.999999999999999e-116  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0278078 
 
 
-
 
NC_010511  M446_3244  extracellular ligand-binding receptor  57.37 
 
 
401 aa  416  9.999999999999999e-116  Methylobacterium sp. 4-46  Bacteria  normal  0.114685  normal  0.545433 
 
 
-
 
NC_008825  Mpe_A3756  putative substrate-binding periplasmic (pbp) ABC transporter protein  52.6 
 
 
407 aa  417  9.999999999999999e-116  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.260098 
 
 
-
 
NC_007958  RPD_1254  ABC-type branched-chain amino acid transport systems, periplasmic component  52.94 
 
 
427 aa  416  9.999999999999999e-116  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.946675 
 
 
-
 
NC_009675  Anae109_1677  ABC branched-chain amino acid transporter, periplasmic ligand biinding protein  53.48 
 
 
404 aa  413  1e-114  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1152  UreA/short-chain amide ABC transporter  52.67 
 
 
415 aa  414  1e-114  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.471291  normal  0.323569 
 
 
-
 
NC_011894  Mnod_0807  extracellular ligand-binding receptor  53.74 
 
 
402 aa  411  1e-114  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.329195  n/a   
 
 
-
 
NC_010511  M446_3023  putative UreA/short-chain amide ABC transporter  56.3 
 
 
406 aa  414  1e-114  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.040363 
 
 
-
 
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