Gene Rmet_1640 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_1640 
Symbol 
ID4038443 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp1772607 
End bp1773845 
Gene Length1239 bp 
Protein Length412 aa 
Translation table11 
GC content61% 
IMG OID637977024 
Productputative UreA/short-chain amide ABC transporter 
Protein accessionYP_583792 
Protein GI94310582 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000640664 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACAA AAGCACAAAA GCTCGCTGCC GCGGTACTGG TCACGGCGGC ATTCACCAGC 
GTGGCCGCGC ACGTCCACGC GCAACCCAAG CCCGGTATCT CCGACGATAT CGTCAAGATC
GGACTACTGC TCGACATGAG CGGCCTGTAC TCCGACGTCA CCGGGCGCGG TAGTGCCGCC
GCCGCGCAGA TGGCGATCGA CGACTTCGGC GGCAAGGTAC TTGGCAAGAA GATAGAACTG
GTGGTGGTCG ATCACCAGAA CAAGGCCGAT ATCGCCGCCA ACAAGGCGCG CGAATGGTTC
GATCAGGACC ACGTGGACGC GATCCTCGAC GTGGCCGCAT CGGCGCCCGC GCTGGCCGTG
CTGGACGTCG CCAAGCAAAA GAACAAGATC GTGGTGTTCT CGGGCCCCGG CACGGAGCGC
ATCACAAATG ATCTGTGCAC GCCCGTGTCC GTCCACTACG CATATGACAC CTACGCGCTG
GCCAACACCA CCGCGCGCGC CATGGTCGAG CGTGGCGGCA AAACGTGGTT TTTCCTGACG
GCCGACTACG CCTTCGGCCA TACACTGCAG CAATCGGCCA CCGCCGTGGT CAATGAGGCC
GGCGGCCGCG TGCTGGGCGC CGCACGGCAT CCTCTCAACA CGAGCGACTT CGCCTCTTAT
CTGCTGCAGG CCCAGGCCAG CAAGGCACAG GTGGTAGGAC TGGCCAATGC CGGTGGTGAC
ACTGTCAACG CGATCAAGGC CGCATCCGAG TTCGGCCTGA CACGCAATGG CAATCAGAAG
CTGGCCGGGC TGCTGCTTTA CATCAACGAC ATCCATGCCA TCGGCCTGAA GACCGCCCAG
GGTCTGGTGC TGACCGAGGC GTTTTACTGG GACATGAATG ACGCCACGCG CGCGTGGTCA
CGCCGTTATT TCGAGAAGGT CAAGAAGATG CCGAACATGA GCCAGGCCGG TGTCTACTCA
TCGGTCTCGC ACTACCTGAA GGCTGTGCAG GCAACCGGTA CCGACGAGAC CGCGGCGGTC
ATGAAGCAGA TGAAAGCCAC GCCGATCAAC GACTTCTTCG CAAAGAACGG ACGCATCCGC
GAGGACGGCC GCATGGTGCA CGACATGTAC CTGTTCGAAG TGAAGAAGCC CGAGGAATCG
AAGTATCCGT GGGACTACTA CAAGCTACTG GCCACGGTGC CTGGAGACCA GGCGTTCATT
CCGCCTTCGA AGTCGCAATG CCCGTTGCTG AAGAAGTAA
 
Protein sequence
MKTKAQKLAA AVLVTAAFTS VAAHVHAQPK PGISDDIVKI GLLLDMSGLY SDVTGRGSAA 
AAQMAIDDFG GKVLGKKIEL VVVDHQNKAD IAANKAREWF DQDHVDAILD VAASAPALAV
LDVAKQKNKI VVFSGPGTER ITNDLCTPVS VHYAYDTYAL ANTTARAMVE RGGKTWFFLT
ADYAFGHTLQ QSATAVVNEA GGRVLGAARH PLNTSDFASY LLQAQASKAQ VVGLANAGGD
TVNAIKAASE FGLTRNGNQK LAGLLLYIND IHAIGLKTAQ GLVLTEAFYW DMNDATRAWS
RRYFEKVKKM PNMSQAGVYS SVSHYLKAVQ ATGTDETAAV MKQMKATPIN DFFAKNGRIR
EDGRMVHDMY LFEVKKPEES KYPWDYYKLL ATVPGDQAFI PPSKSQCPLL KK