Gene RPB_0554 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_0554 
Symbol 
ID3909593 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp624346 
End bp625554 
Gene Length1209 bp 
Protein Length402 aa 
Translation table11 
GC content64% 
IMG OID637882442 
ProductureA/short-chain amide ABC transporter 
Protein accessionYP_484176 
Protein GI86747680 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.930825 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0786148 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGACCCA TCCGCACCAC ACTACTCGCT TGTCTGTCGA TCGCCGCGAT CTCGGCCGCG 
CAGGCGCAAT CGCAGCCGCC GCTGAAGCTC GGCGCGATCC TCGACATGTC CGGCCTCTAC
GCCGACATCA CCGGCACCGG CAGCGAGACC GCGGCGAAGA TGGCGGCGGA AGATTTCGGC
GGCACCGTGC TCGGCCGCAA GATCGAGATC ATCGCCGCCG ATCATCTCAA CAAGGCCGAC
CTCGCCGCCA GCATTGCGCG CGACATGATC GACAATCAGG GCGTCGAGGC GATCATCGAC
GTCGCCGCCT CCGCCACCGC GCTCGCCGCC GGCGAGATCG CCAAGGCGCG CAACAAGATC
ATCATGTATT CGGGGCCGGG CTCGGTGCGC CTGTCCAACG AGGCGTGCGG TCCCTACACC
ATCCACTATT CCTACGACAC CTTCGCGCAG GCCAACGTCG CCGGTCTCGC CTCGGTGAAG
CAGGGTCTCG ACACCTGGTT CTTCCTGTCG GCGGACTACG CCTTCGGGCA GGATCTCGAG
CGCGACACCA CCAACGTCGT CAAGGCCTCC GGCGGCAAGG TGCTGGGCAG CGTCAAGCAT
CCGATCAACA CCTCGGACTT CTCGTCCTTC CTGCTGCAGG CGCAAAGCTC GAACGCCAAG
GTGATCGGGC TCGCCAATGC CGGCGGCGAC ACCATCAACG CGATCAAACA GGCGGCGGAA
TTCGGCATCA CCCGCAAGGG TGGCCAGAAG ATCCTGCCGC TGCTCGCCTT CATCACCGAC
ATCGACAGCA TCGGGCTCGA GACCGCCCAG GGCCTGCTGA TCGCCGGCGC GTTCTATTGG
GACATGAACG ACGAGACCCG CGCGTTCTCC AAGCGCTTCA TGGAACGCAC CAAGCGGGTG
CCGACCTCGG CGCAGGCGGG CCTGTATTCC GAGACGATGC ACTATCTGCA GGCGGTGAAA
GCCGCCGGCA CCACCGACGC CGCGGCGGTG ATGAAGAAGA TGAAGGAAGC TCCGATCAAC
GATTTCTTTG CCAGGAACGG TAAGATCCGC GAGGACGGCC GCATGGTCCA CGACATGTAT
CTGTTCGAGG TCAAGAAGCC GTCGGAATCC AAAGGCCGCT GGGATTACTA CAAGCTGCTC
GCCACCGTCC CCGGCGATCA GGCATTCCAG CCGCTGTCGG CATCGCGCTG CCCGCTGGTG
AAGAATTAA
 
Protein sequence
MRPIRTTLLA CLSIAAISAA QAQSQPPLKL GAILDMSGLY ADITGTGSET AAKMAAEDFG 
GTVLGRKIEI IAADHLNKAD LAASIARDMI DNQGVEAIID VAASATALAA GEIAKARNKI
IMYSGPGSVR LSNEACGPYT IHYSYDTFAQ ANVAGLASVK QGLDTWFFLS ADYAFGQDLE
RDTTNVVKAS GGKVLGSVKH PINTSDFSSF LLQAQSSNAK VIGLANAGGD TINAIKQAAE
FGITRKGGQK ILPLLAFITD IDSIGLETAQ GLLIAGAFYW DMNDETRAFS KRFMERTKRV
PTSAQAGLYS ETMHYLQAVK AAGTTDAAAV MKKMKEAPIN DFFARNGKIR EDGRMVHDMY
LFEVKKPSES KGRWDYYKLL ATVPGDQAFQ PLSASRCPLV KN