More than 300 homologs were found in PanDaTox collection
for query gene BBta_5091 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007778  RPB_3199  extracellular ligand-binding receptor  85.32 
 
 
405 aa  706    Rhodopseudomonas palustris HaA2  Bacteria  normal  0.206752  normal  0.636131 
 
 
-
 
NC_009485  BBta_5091  putative branched-chain amino acid ABC transporter, substrate-binding protein  100 
 
 
416 aa  860    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.339692  normal  0.603773 
 
 
-
 
NC_011004  Rpal_2487  Extracellular ligand-binding receptor  87.34 
 
 
404 aa  703    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.589907  n/a   
 
 
-
 
NC_007958  RPD_2256  extracellular ligand-binding receptor  88.03 
 
 
403 aa  704    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.777349  normal  0.277076 
 
 
-
 
NC_009485  BBta_0682  putative branched chain amino acid binding protein  57.97 
 
 
395 aa  479  1e-134  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.246685  normal  0.442954 
 
 
-
 
NC_007778  RPB_4690  extracellular ligand-binding receptor  58.27 
 
 
397 aa  476  1e-133  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_5300  putative periplasmic substrate binding protein  60 
 
 
397 aa  478  1e-133  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.401613  n/a   
 
 
-
 
NC_009717  Xaut_5024  extracellular ligand-binding receptor  55.73 
 
 
400 aa  473  1e-132  Xanthobacter autotrophicus Py2  Bacteria  normal  0.151241  normal 
 
 
-
 
NC_007925  RPC_0074  putative branched chain amino acid periplasmic binding protein of ABC transporter  56.96 
 
 
399 aa  471  1.0000000000000001e-131  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_4400  putative branched chain amino acid periplasmic binding protein of ABC transporter  57.63 
 
 
397 aa  471  1.0000000000000001e-131  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_1578  ABC transporter substrate-binding protein  57.07 
 
 
402 aa  468  1.0000000000000001e-131  Xanthobacter autotrophicus Py2  Bacteria  normal  0.803505  normal 
 
 
-
 
NC_007958  RPD_0275  putative ureA/short-chain amide ABC transporter  57.18 
 
 
401 aa  466  9.999999999999999e-131  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.325884 
 
 
-
 
NC_011894  Mnod_7057  Extracellular ligand-binding receptor  55.25 
 
 
420 aa  463  1e-129  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3789  Leu/Ile/Val-binding family protein  54.89 
 
 
409 aa  464  1e-129  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.710609 
 
 
-
 
NC_009720  Xaut_1437  extracellular ligand-binding receptor  56.64 
 
 
401 aa  461  9.999999999999999e-129  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.694305 
 
 
-
 
NC_011004  Rpal_0486  substrate-binding protein  58.56 
 
 
401 aa  458  9.999999999999999e-129  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6215  putative ABC branched-chain amino transporter, periplasmic binding protein  58.71 
 
 
403 aa  460  9.999999999999999e-129  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.947625  normal 
 
 
-
 
NC_007778  RPB_0554  ureA/short-chain amide ABC transporter  57.71 
 
 
402 aa  456  1e-127  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.930825  normal  0.0786148 
 
 
-
 
NC_007973  Rmet_1640  putative UreA/short-chain amide ABC transporter  54.01 
 
 
412 aa  455  1e-127  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.000640664  normal 
 
 
-
 
NC_010511  M446_1790  Leu/Ile/Val-binding family protein  53.87 
 
 
417 aa  456  1e-127  Methylobacterium sp. 4-46  Bacteria  normal  0.322977  normal  0.0207356 
 
 
-
 
NC_004311  BRA0953  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative  53.77 
 
 
401 aa  452  1.0000000000000001e-126  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0894  putative branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  54.03 
 
 
401 aa  454  1.0000000000000001e-126  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_0709  Leu/Ile/Val-binding family protein  55.23 
 
 
406 aa  452  1.0000000000000001e-126  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.195015  n/a   
 
 
-
 
NC_011894  Mnod_2526  ABC transporter substrate-binding protein  56.14 
 
 
411 aa  450  1e-125  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.779779  n/a   
 
 
-
 
NC_010511  M446_6250  ABC transporter substrate-binding protein  54.21 
 
 
413 aa  450  1e-125  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0435582 
 
 
-
 
NC_010511  M446_5530  putative ABC branched-chain amino transporter, periplasmic binding protein  53.96 
 
 
401 aa  449  1e-125  Methylobacterium sp. 4-46  Bacteria  normal  0.460998  normal 
 
 
-
 
NC_009485  BBta_7539  putative ABC transporter (substrate binding protein)  56.74 
 
 
394 aa  446  1.0000000000000001e-124  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_3593  putative ABC transporter substrate binding protein  55.32 
 
 
403 aa  446  1.0000000000000001e-124  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.636574 
 
 
-
 
NC_007348  Reut_B3887  ureA/short-chain amide ABC transporter  52.14 
 
 
413 aa  441  1e-123  Ralstonia eutropha JMP134  Bacteria  normal  0.0891482  n/a   
 
 
-
 
NC_007964  Nham_1674  ABC transporter substrate-binding protein  53.16 
 
 
409 aa  442  1e-123  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_0057  extracellular ligand-binding receptor  54.39 
 
 
405 aa  441  9.999999999999999e-123  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.652717  normal 
 
 
-
 
NC_003295  RSc3342  putative substrate-binding periplasmic (PBP) ABC transporter protein  52.78 
 
 
402 aa  441  9.999999999999999e-123  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6729  Extracellular ligand-binding receptor  53.42 
 
 
401 aa  439  9.999999999999999e-123  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A3369  extracellular ligand-binding receptor  51.84 
 
 
402 aa  439  9.999999999999999e-123  Ralstonia eutropha JMP134  Bacteria  normal  0.998438  n/a   
 
 
-
 
NC_011366  Rleg2_5823  putative branched-chain amino acid ABC transporter, substrate-binding protein  53.42 
 
 
401 aa  441  9.999999999999999e-123  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.281514  normal  0.102648 
 
 
-
 
NC_011894  Mnod_5117  putative UreA/short-chain amide ABC transporter  54.14 
 
 
404 aa  441  9.999999999999999e-123  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_1402  branched-chain amino acid ABC transporter, periplasmic amino acid- binding protein  52.74 
 
 
401 aa  441  9.999999999999999e-123  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_3122  Extracellular ligand-binding receptor  52.27 
 
 
419 aa  440  9.999999999999999e-123  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2864  putative periplasmic binding ABC transporter protein  52.78 
 
 
401 aa  440  9.999999999999999e-123  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.581336 
 
 
-
 
NC_011662  Tmz1t_1377  ABC transporter substrate-binding protein  52.66 
 
 
404 aa  437  1e-121  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3119  Extracellular ligand-binding receptor  50.63 
 
 
403 aa  436  1e-121  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.741733  n/a   
 
 
-
 
NC_009720  Xaut_4079  ABC-type branched-chain amino acid transport system, periplasmic component  53.02 
 
 
405 aa  434  1e-120  Xanthobacter autotrophicus Py2  Bacteria  normal  0.23084  normal 
 
 
-
 
NC_009720  Xaut_3348  extracellular ligand-binding receptor  52.13 
 
 
403 aa  430  1e-119  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.164921 
 
 
-
 
NC_012856  Rpic12D_3211  Extracellular ligand-binding receptor  51.38 
 
 
402 aa  430  1e-119  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007494  RSP_3297  ABC branched-chain amino acid transporter, periplasmic binding protein  53.21 
 
 
400 aa  430  1e-119  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.300791  n/a   
 
 
-
 
NC_009050  Rsph17029_4029  ABC branched-chain amino acid transporter, periplasmic binding protein  52.94 
 
 
400 aa  428  1e-119  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3421  ABC transporter substrate-binding protein  51.02 
 
 
406 aa  431  1e-119  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009429  Rsph17025_3292  hypothetical protein  52.41 
 
 
400 aa  429  1e-119  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.406168  normal 
 
 
-
 
NC_007958  RPD_1254  ABC-type branched-chain amino acid transport systems, periplasmic component  52.39 
 
 
427 aa  429  1e-119  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.946675 
 
 
-
 
NC_010682  Rpic_3537  putative substrate-binding periplasmic (PBP) ABC transporter protein  51 
 
 
402 aa  427  1e-118  Ralstonia pickettii 12J  Bacteria  normal  0.277166  normal  0.0827229 
 
 
-
 
NC_007778  RPB_1152  UreA/short-chain amide ABC transporter  52.25 
 
 
415 aa  427  1e-118  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.471291  normal  0.323569 
 
 
-
 
NC_009485  BBta_3757  ABC transporter substrate-binding protein  53.03 
 
 
409 aa  425  1e-118  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3282  Extracellular ligand-binding receptor  54.01 
 
 
408 aa  425  1e-118  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0100489  n/a   
 
 
-
 
NC_010511  M446_1336  extracellular ligand-binding receptor  51.84 
 
 
400 aa  422  1e-117  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.116449 
 
 
-
 
NC_008782  Ajs_3120  putative substrate-binding periplasmic (pbp) ABC transporter protein  51.78 
 
 
400 aa  422  1e-117  Acidovorax sp. JS42  Bacteria  normal  0.347887  normal 
 
 
-
 
NC_009720  Xaut_3229  putative ABC branched-chain amino transporter, periplasmic binding protein  54.45 
 
 
412 aa  423  1e-117  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A0019  branched chain amino acid ABC transporter periplasmic ligand-binding protein  51.13 
 
 
404 aa  421  1e-117  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1339  ABC transporter substrate binding protein  54.91 
 
 
412 aa  424  1e-117  Methylobacterium sp. 4-46  Bacteria  normal  0.358784  normal  0.213428 
 
 
-
 
NC_009720  Xaut_1298  putative ABC branched-chain amino transporter, periplasmic binding protein  51.6 
 
 
419 aa  424  1e-117  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_0087  extracellular ligand-binding receptor  52.82 
 
 
399 aa  422  1e-117  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0356646  normal 
 
 
-
 
NC_011992  Dtpsy_2466  Extracellular ligand-binding receptor  51.78 
 
 
400 aa  423  1e-117  Acidovorax ebreus TPSY  Bacteria  normal  0.469696  n/a   
 
 
-
 
NC_010505  Mrad2831_4022  extracellular ligand-binding receptor  49.62 
 
 
404 aa  422  1e-117  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.339015  normal  0.405471 
 
 
-
 
NC_007973  Rmet_3518  extracellular ligand-binding receptor  51.52 
 
 
402 aa  421  1e-117  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.36456 
 
 
-
 
NC_010511  M446_3023  putative UreA/short-chain amide ABC transporter  56.15 
 
 
406 aa  424  1e-117  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.040363 
 
 
-
 
NC_010505  Mrad2831_0329  putative ABC transport protein substrate-binding component  53.09 
 
 
405 aa  424  1e-117  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.42175  normal 
 
 
-
 
NC_008390  Bamb_0076  extracellular ligand-binding receptor  52.82 
 
 
399 aa  422  1e-117  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_0008  extracellular ligand-binding receptor  52.42 
 
 
400 aa  422  1e-117  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.0939525  n/a   
 
 
-
 
NC_007336  Reut_C6432  extracellular ligand-binding receptor  51.87 
 
 
407 aa  418  1e-116  Ralstonia eutropha JMP134  Bacteria  hitchhiker  0.00470186  n/a   
 
 
-
 
NC_007643  Rru_A3303  amide-urea binding protein  49.52 
 
 
404 aa  421  1e-116  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.219547  n/a   
 
 
-
 
NC_008782  Ajs_3119  extracellular ligand-binding receptor  52.26 
 
 
398 aa  418  1e-116  Acidovorax sp. JS42  Bacteria  normal  0.125075  normal 
 
 
-
 
NC_010511  M446_3244  extracellular ligand-binding receptor  54.11 
 
 
401 aa  418  1e-116  Methylobacterium sp. 4-46  Bacteria  normal  0.114685  normal  0.545433 
 
 
-
 
NC_009485  BBta_4670  putative ABC transporter, substrate-binding protein  49.62 
 
 
403 aa  420  1e-116  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3913  Extracellular ligand-binding receptor  50.63 
 
 
404 aa  421  1e-116  Burkholderia phytofirmans PsJN  Bacteria  normal  0.956199  normal 
 
 
-
 
NC_009485  BBta_6351  putative branched-chain amino acid ABC transporter, substrate-binding protein  53.48 
 
 
403 aa  415  9.999999999999999e-116  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.182816 
 
 
-
 
NC_007510  Bcep18194_A3267  branched chain amino acid ABC transporter periplasmic ligand-binding protein  52.28 
 
 
399 aa  416  9.999999999999999e-116  Burkholderia sp. 383  Bacteria  normal  normal  0.275506 
 
 
-
 
NC_007651  BTH_I3329  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  50.25 
 
 
398 aa  415  9.999999999999999e-116  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3279  Extracellular ligand-binding receptor  52.55 
 
 
400 aa  417  9.999999999999999e-116  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.463071  n/a   
 
 
-
 
NC_007778  RPB_2450  urea/short-chain binding protein of ABC transporter  53.37 
 
 
408 aa  417  9.999999999999999e-116  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.045034  normal  0.258523 
 
 
-
 
NC_010084  Bmul_0085  branched chain amino acid ABC transporter periplasmic ligand-binding protein  51.74 
 
 
399 aa  416  9.999999999999999e-116  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.56224  normal 
 
 
-
 
NC_007778  RPB_3877  urea/short-chain binding protein of ABC transporter  50.25 
 
 
406 aa  417  9.999999999999999e-116  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.188449  normal 
 
 
-
 
NC_008825  Mpe_A3756  putative substrate-binding periplasmic (pbp) ABC transporter protein  50.91 
 
 
407 aa  415  9.999999999999999e-116  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.260098 
 
 
-
 
NC_011004  Rpal_3503  putative ABC transporter, substrate binding protein  53.49 
 
 
408 aa  417  9.999999999999999e-116  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.10294  n/a   
 
 
-
 
NC_011894  Mnod_1194  putative ABC branched-chain amino transporter, periplasmic binding protein  50.95 
 
 
405 aa  417  9.999999999999999e-116  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_2999  putative urea/short-chain binding protein of ABC transporter  53.46 
 
 
408 aa  417  9.999999999999999e-116  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0873398  normal  0.403324 
 
 
-
 
NC_011992  Dtpsy_2465  Extracellular ligand-binding receptor  52.01 
 
 
398 aa  416  9.999999999999999e-116  Acidovorax ebreus TPSY  Bacteria  normal  0.357174  n/a   
 
 
-
 
NC_010508  Bcenmc03_0103  branched chain amino acid ABC transporter periplasmic ligand-binding protein  52.28 
 
 
399 aa  416  9.999999999999999e-116  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.32797  normal 
 
 
-
 
NC_008060  Bcen_2970  branched chain amino acid ABC transporter periplasmic ligand-binding protein  52.55 
 
 
399 aa  417  9.999999999999999e-116  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0085  branched chain amino acid ABC transporter periplasmic ligand-binding protein  52.55 
 
 
399 aa  417  9.999999999999999e-116  Burkholderia cenocepacia HI2424  Bacteria  normal  0.782241  n/a   
 
 
-
 
NC_008686  Pden_1717  ABC branched-chain amino acid transporter, periplasmic binding protein  50.25 
 
 
399 aa  417  9.999999999999999e-116  Paracoccus denitrificans PD1222  Bacteria  normal  0.620152  normal 
 
 
-
 
NC_011892  Mnod_8470  ABC-type branched-chain amino acid transport systems, periplasmic component  48.61 
 
 
411 aa  414  1e-114  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.481667  n/a   
 
 
-
 
NC_009485  BBta_3779  putative ABC transporter, substrate binding protein  53.32 
 
 
408 aa  412  1e-114  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008785  BMASAVP1_A3375  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  50.92 
 
 
398 aa  412  1e-114  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0198  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  50.92 
 
 
398 aa  412  1e-114  Burkholderia pseudomallei 1710b  Bacteria  normal  0.352006  n/a   
 
 
-
 
NC_007925  RPC_2953  ABC transporter substrate-binding protein  53.52 
 
 
408 aa  412  1e-114  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.137688  normal 
 
 
-
 
NC_011894  Mnod_0807  extracellular ligand-binding receptor  49.24 
 
 
402 aa  415  1e-114  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.329195  n/a   
 
 
-
 
NC_007958  RPD_2475  ABC-type branched-chain amino acid transport systems, periplasmic component  50 
 
 
405 aa  412  1e-114  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.25109 
 
 
-
 
NC_008836  BMA10229_A1607  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  50.39 
 
 
392 aa  414  1e-114  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_4065  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  50.92 
 
 
398 aa  412  1e-114  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_1936  extracellular ligand-binding receptor  53.05 
 
 
409 aa  413  1e-114  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0141282 
 
 
-
 
NC_009074  BURPS668_3991  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  50.92 
 
 
398 aa  412  1e-114  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
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