Gene Pnuc_0008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0008 
Symbol 
ID5053435 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand
Start bp7672 
End bp8874 
Gene Length1203 bp 
Protein Length400 aa 
Translation table11 
GC content42% 
IMG OID640470150 
Productextracellular ligand-binding receptor 
Protein accessionYP_001154794 
Protein GI145588197 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0939525 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACAAA CTTTGATTTC TATTGCGGCT GCCGCTTTGG TTGCAGTTGC AGGTAATGCT 
GGTGCGGCAG ATCAACCGCC ATTAAAAATC GGTTTTATTA CAGATATGTC AGGTTTATAT
TCCGACATTG ATGGTCAGGG AGGCTTAGAG GCCATGAAGA TGGCGGTTGC AGATTTTGGT
GGCACCGTAA ATGGTAGAAA AATTGAAATT ATTTCTGCTG ACCACCAAAA TAAAGCAGAC
GTTGCCGCAT CGAAAACAAG AGAGTGGATT GATCAAAATG GCGTAAGCGT TGTTTTTGGC
GGTACAAATT CTGGAACCGC CTTAGCCACA GCCAAGGTAG CCGCTGAGAA AAAGCGTATT
TATATTAATA ATGGTGCCGG TACATCTGCT TTAACAAATG AGCAATGTAG CCCTTACACA
ATTCACTACA CCTATGACAC AATTGCTTTG GCTAATGGCT CAGCCAAAGG CTTGGTTGAT
AAGGGTTATA AAAATTGGTA TTTCTTAACT GCGGATTACG CTTTTGGCTA TGCACTTGAA
AAAGACGCAT CAAATGTAGT GCTTGCTAAT GGCGGTAAAG TGTTAGGCGA CTCAAAGCAC
CCACTAAACG CCAGCGATTT TTCTTCTTAT TTACTCCAAG CTCAAAACTC AAAAGCCCAA
GTTCTTGGTT TGGCTAATGC CGGCGGAGAT ACGATTAACT CTGTTAAGGC GGCTAATGAG
TTTGGTATTA CCAAAACCAT GAAGCTTGCT GGTTTGTTAG TGTTTATTAC TGATGTGCAC
GCTATTGGCA TTAAAAACGC ACAAGGTCTT TTGGCTACTA CCGCATGGTA CTGGGATCAA
AATGACCAAA CCCGTAAATT TGCTGGCCGT TTCATGGAAA AAATGAAGCG CATGCCAAGT
ATGGTTCAGG CCGGCGACTA CTCATCCACA ATGACTTACC TTAATGCGGT TAAAGCAGCG
GGTACAGATG ATTCCGATAA GGTAATGGCC CAATTACGCA AGACCAAAAT TAACGATATG
TTCACCAAAA ATGGCTATAT CCGCAAAGAT GGCACCATGG TTCACGACAT GTACCTCTAT
GAAGTGAAAA CTCCAGCAGA AGTTAAAAGC CCATGGGATT ACTACAAGCT TGTATCCACA
CTTTCTGGAG AAAAAGCTTT CACAATTCCG CCTGATTCAA AATGCGCTTT GTTGAATAAG
TAA
 
Protein sequence
MKQTLISIAA AALVAVAGNA GAADQPPLKI GFITDMSGLY SDIDGQGGLE AMKMAVADFG 
GTVNGRKIEI ISADHQNKAD VAASKTREWI DQNGVSVVFG GTNSGTALAT AKVAAEKKRI
YINNGAGTSA LTNEQCSPYT IHYTYDTIAL ANGSAKGLVD KGYKNWYFLT ADYAFGYALE
KDASNVVLAN GGKVLGDSKH PLNASDFSSY LLQAQNSKAQ VLGLANAGGD TINSVKAANE
FGITKTMKLA GLLVFITDVH AIGIKNAQGL LATTAWYWDQ NDQTRKFAGR FMEKMKRMPS
MVQAGDYSST MTYLNAVKAA GTDDSDKVMA QLRKTKINDM FTKNGYIRKD GTMVHDMYLY
EVKTPAEVKS PWDYYKLVST LSGEKAFTIP PDSKCALLNK