Gene Smed_2864 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2864 
Symbol 
ID5323740 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp2996806 
End bp2998011 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content61% 
IMG OID640791815 
Productputative periplasmic binding ABC transporter protein 
Protein accessionYP_001328529 
Protein GI150398062 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.581336 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATAAGA AACTGATCGC CACGCTGGCA ATGGTGCTCG CCAGCAGCAC GGCCGCCCTT 
GCCGACGCAT CCGACGGCAA GGTGAAGATC GGCATCCTCA ACGACCAATC CGGCGTCTAT
GCCGATTTCG GCGGCAAATC GTCTTACGAG GCGGCGCTCA TGGCGGTCGA AGACTTCGGC
GGCAAAGTGC TCGGCGTTCC TGTCGAGGTG GTTACGGCAG ACCACCAGAA CAAGCCGGAC
ATCGCTTCGA ATATTGCTCG GCAATGGTAC GACACCGAAC AGGTGGACAG TATCATGGAG
TTGACCACCT CCTCCGTTGC GCTCGCGGTC CAGGCGATCT CGAAGGAGAA GAAGAAGATC
GACATCGTAA CCGGAGCGGC GACGACGGAG CTGACCGGCA AACAGTGCAG CCCCTATGGT
TTTCACTGGG CCTATGACAC CCATTCGCTC GCAGTCGGCA CCGGCGGTGC GCTGGTCAAA
CAGGGCGGAG ACAGCTGGTT CTTCCTGACC GCTGACTATG CCTTCGGCTA TTCGCTCGAG
GAAAATACCG GCAACTACGT CAAGGAGAAC GGCGGTACCG TCGTCGGTGC CGTCCGCCAT
CCGCTCGCCT CCACCGATTT CTCTTCCTTC CTCCTTCAGG CGCAGTCCTC GGGAGCCAAG
GTGATCGGCC TTGCCAATGC CGGCCTTGAC ACCTCCAACG CCATCAAGCA GGCGGCCGAA
TTCGGGATCG TTCAGGGCGG CCAGCGCCTC GCGGCTCTGC TCTTCACGCT TGCCGAAGTC
CACGGCCTCG GCCTTGAAGC CGCGCAGGGG CTGACGTTGA CGGAGGGTTT CTACTGGAAC
CGCGATGAGG AGAGCGCCAA GTTCGGCAAA CGCTTCATGG AGCGCACCGG CAAGATGCCG
AACATGGTTC ATGCCGGCAC CTACTCGGCC GTGCTGCAAT ATTTGAAGGC GATCGAGAAG
GCCGGCACCG ACGAAACCGA AGCAGTCGCC AAGGAACTTC ATGCGCTGCC GGTCGACGAC
GTTTTCGCCA AGAACGGGAC GGTCGCACCG AACGGCCGGA TGGTCCACGA CATGTACCTG
CTCGAGGTGA AGAAACCGGA CGAGAGCAAG GAGCCTTGGG ATTACTTCAA GGTGCTCGCG
ACCATCCCCG GAAAGGAAGC CTTCATGGAT CCGGCCCAGA GCGGCTGCGA ACTCGTGAAG
TCCTGA
 
Protein sequence
MHKKLIATLA MVLASSTAAL ADASDGKVKI GILNDQSGVY ADFGGKSSYE AALMAVEDFG 
GKVLGVPVEV VTADHQNKPD IASNIARQWY DTEQVDSIME LTTSSVALAV QAISKEKKKI
DIVTGAATTE LTGKQCSPYG FHWAYDTHSL AVGTGGALVK QGGDSWFFLT ADYAFGYSLE
ENTGNYVKEN GGTVVGAVRH PLASTDFSSF LLQAQSSGAK VIGLANAGLD TSNAIKQAAE
FGIVQGGQRL AALLFTLAEV HGLGLEAAQG LTLTEGFYWN RDEESAKFGK RFMERTGKMP
NMVHAGTYSA VLQYLKAIEK AGTDETEAVA KELHALPVDD VFAKNGTVAP NGRMVHDMYL
LEVKKPDESK EPWDYFKVLA TIPGKEAFMD PAQSGCELVK S