Gene Rpal_2487 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_2487 
Symbol 
ID6410149 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp2682181 
End bp2683395 
Gene Length1215 bp 
Protein Length404 aa 
Translation table11 
GC content62% 
IMG OID642712366 
ProductExtracellular ligand-binding receptor 
Protein accessionYP_001991476 
Protein GI192290871 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.589907 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACACTCG TTCAACGGGC GGCGGCGATG ATGCTGGCCG CGCCGCTGCT GCTCGGGGCA 
CCCGCCTTCG CGCAGCAACA GGCCCCGCTC AAGATCGGTC TGCTCGGCGA CTTCCAGTCG
GTGTATTCCG ACATCGGCGG CCAGGGCAAT GTCGAAGCCG CCAAGATGGC GATCGAGGAG
ATGGGCGGCA CGATGTTTGG CAAGCCGATC GAGTTCATCT CGGCGGACGT GCAGAACAAG
CCCGACATCG CGGCGTCGCT GGCGCGCAAA TGGTACGAGA ATGAAAACGT CGACATGATC
GTCGATCTGC CGACCTCGGC CACCGCGCTC GCCGCGATGG AGATGTCGAA GAAGTTCGAG
AAGATCATGA TCGTCACCGA CGCGGCGTCG TCGGACATCA CCGGCAAATC GTGCTCGCCC
TATACCGCGC ACTGGACCTA CGACACCTAT TCGAACGCCC ACACCGTCGG CTCGGCGATC
GTGAAGAACG GCGGCGATAC CTGGTTCTTC ATCACCGCGG ACTATCTGTT CGGCCACTCG
ATCGAACGCG ACACCGGCGA GGTGGTGAAA GCGGCAGGCG GCAAGGTGCT CGGCAGCGCG
CGGCATCCCT TGAATAACGC CGACTTCTCG TCGTTCCTGC TGCAGGCGCA GTCGTCGAAG
GCCAAGATCA TCGGCATGGC TAATGGCGGT GGCGACACCA TCAACACCAT CAAGCAGGCG
GCTGAATTCG GCATCGTCAC CGGCGGCCAG AAGCTCGCCG GCATCGTGAT GTTCATCTCC
GACATCCACA GCCTGGGGCT GAAGATGGCC AACGGCCTGA TCATCACCGA GGCGTATTAT
TGGGACCTCA ACGACCGCAC CCGCGCGTTC GGCAAGAAGT TTTACGAGCG CACCAAGCGG
ATGCCGACGA TGAACCAGGC CGCGACCTAC AGCGCGACGT TGCATTACCT GAAGGCGGTG
AAGGCGGCGA ACAGCAAGGA CACCAAGACG GTGCTGGCGA AGATGCGCGA ACTGCCGGTG
CGCGACGCCT TCACCGACAA CGGCTTCCTG CGCGAAGACG GCCGCATGGT GCACTCGATG
TTCCTGTTCG AGGTCAAGAA ACCGGAGGAA TCCAAGGCGC CATGGGACTA CTACAAGGTC
CTCGCCGAAG TCCCCGGCGA CCAGGCCTTC CGCCCCCTGA AAGACGGCGG TTGCCCGCTG
GTGAAGACGG AGTAG
 
Protein sequence
MTLVQRAAAM MLAAPLLLGA PAFAQQQAPL KIGLLGDFQS VYSDIGGQGN VEAAKMAIEE 
MGGTMFGKPI EFISADVQNK PDIAASLARK WYENENVDMI VDLPTSATAL AAMEMSKKFE
KIMIVTDAAS SDITGKSCSP YTAHWTYDTY SNAHTVGSAI VKNGGDTWFF ITADYLFGHS
IERDTGEVVK AAGGKVLGSA RHPLNNADFS SFLLQAQSSK AKIIGMANGG GDTINTIKQA
AEFGIVTGGQ KLAGIVMFIS DIHSLGLKMA NGLIITEAYY WDLNDRTRAF GKKFYERTKR
MPTMNQAATY SATLHYLKAV KAANSKDTKT VLAKMRELPV RDAFTDNGFL REDGRMVHSM
FLFEVKKPEE SKAPWDYYKV LAEVPGDQAF RPLKDGGCPL VKTE