Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_2487 |
Symbol | |
ID | 6410149 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 2682181 |
End bp | 2683395 |
Gene Length | 1215 bp |
Protein Length | 404 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642712366 |
Product | Extracellular ligand-binding receptor |
Protein accession | YP_001991476 |
Protein GI | 192290871 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.589907 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACACTCG TTCAACGGGC GGCGGCGATG ATGCTGGCCG CGCCGCTGCT GCTCGGGGCA CCCGCCTTCG CGCAGCAACA GGCCCCGCTC AAGATCGGTC TGCTCGGCGA CTTCCAGTCG GTGTATTCCG ACATCGGCGG CCAGGGCAAT GTCGAAGCCG CCAAGATGGC GATCGAGGAG ATGGGCGGCA CGATGTTTGG CAAGCCGATC GAGTTCATCT CGGCGGACGT GCAGAACAAG CCCGACATCG CGGCGTCGCT GGCGCGCAAA TGGTACGAGA ATGAAAACGT CGACATGATC GTCGATCTGC CGACCTCGGC CACCGCGCTC GCCGCGATGG AGATGTCGAA GAAGTTCGAG AAGATCATGA TCGTCACCGA CGCGGCGTCG TCGGACATCA CCGGCAAATC GTGCTCGCCC TATACCGCGC ACTGGACCTA CGACACCTAT TCGAACGCCC ACACCGTCGG CTCGGCGATC GTGAAGAACG GCGGCGATAC CTGGTTCTTC ATCACCGCGG ACTATCTGTT CGGCCACTCG ATCGAACGCG ACACCGGCGA GGTGGTGAAA GCGGCAGGCG GCAAGGTGCT CGGCAGCGCG CGGCATCCCT TGAATAACGC CGACTTCTCG TCGTTCCTGC TGCAGGCGCA GTCGTCGAAG GCCAAGATCA TCGGCATGGC TAATGGCGGT GGCGACACCA TCAACACCAT CAAGCAGGCG GCTGAATTCG GCATCGTCAC CGGCGGCCAG AAGCTCGCCG GCATCGTGAT GTTCATCTCC GACATCCACA GCCTGGGGCT GAAGATGGCC AACGGCCTGA TCATCACCGA GGCGTATTAT TGGGACCTCA ACGACCGCAC CCGCGCGTTC GGCAAGAAGT TTTACGAGCG CACCAAGCGG ATGCCGACGA TGAACCAGGC CGCGACCTAC AGCGCGACGT TGCATTACCT GAAGGCGGTG AAGGCGGCGA ACAGCAAGGA CACCAAGACG GTGCTGGCGA AGATGCGCGA ACTGCCGGTG CGCGACGCCT TCACCGACAA CGGCTTCCTG CGCGAAGACG GCCGCATGGT GCACTCGATG TTCCTGTTCG AGGTCAAGAA ACCGGAGGAA TCCAAGGCGC CATGGGACTA CTACAAGGTC CTCGCCGAAG TCCCCGGCGA CCAGGCCTTC CGCCCCCTGA AAGACGGCGG TTGCCCGCTG GTGAAGACGG AGTAG
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Protein sequence | MTLVQRAAAM MLAAPLLLGA PAFAQQQAPL KIGLLGDFQS VYSDIGGQGN VEAAKMAIEE MGGTMFGKPI EFISADVQNK PDIAASLARK WYENENVDMI VDLPTSATAL AAMEMSKKFE KIMIVTDAAS SDITGKSCSP YTAHWTYDTY SNAHTVGSAI VKNGGDTWFF ITADYLFGHS IERDTGEVVK AAGGKVLGSA RHPLNNADFS SFLLQAQSSK AKIIGMANGG GDTINTIKQA AEFGIVTGGQ KLAGIVMFIS DIHSLGLKMA NGLIITEAYY WDLNDRTRAF GKKFYERTKR MPTMNQAATY SATLHYLKAV KAANSKDTKT VLAKMRELPV RDAFTDNGFL REDGRMVHSM FLFEVKKPEE SKAPWDYYKV LAEVPGDQAF RPLKDGGCPL VKTE
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