Gene BBta_3779 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_3779 
Symbol 
ID5155869 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp3958055 
End bp3959281 
Gene Length1227 bp 
Protein Length408 aa 
Translation table11 
GC content63% 
IMG OID640558618 
Productputative ABC transporter, substrate binding protein 
Protein accessionYP_001239762 
Protein GI148255177 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCACGT CTCATGCGCG GCGGATGGCC GCGTTGCTTG CCGCCACCAC GCTCAGCTTT 
GCCGGCTCCG CCTTCGCCGA CGACAAGGTC GTCAAGATCG GCGTGCTCAA CGACATGTCG
AGCCTCTATG CCGATATCGG CGGTCCCAAC TCGGTGGCCG CGATCAACAT GGCGGTCGAA
GATTCCGGCA TGAAGGCAAA AGGCTGGACC ATCGAGGTCA TCAGCGGCGA TCACCAGAAC
AAGCCCGACA TCGGCGTCAA CATCGGCCGG CAATGGATCG ACACCCAGAA AGTCGACGTG
ATCATGGATA CGCCGAACTC CGGCGTCGCG CTCGCGGTCT CCAATCTGGT CAAGGAAAAG
AACTCGATCC TGATCAATTC CGGCGGTGCG AGCGCTGACC TCACCGGCAA GGCCTGCAAC
GCCAACACCA TCTCCTACAC CTATGACACC TACATGCTGG CGAACGGCAC CGGCAAGGCG
CTGACCAAGG CCGGCGGCGA CAGCTGGTTC TTCCTGACCG CGGACTACGC GTTCGGCCAT
GCGCTGGAGC GCGACACTTC GGCGGTCGTC ACCGCCAATG GCGGCAAGGT GCTCGGCTCG
GTCAAGCATC CGCTCAACAC CGCCGATTTC TCCTCGTTCC TGCTGCAGGC GCAATCGTCG
AAGGCCAAGG TCATCGGCCT CGCCAATGCC GGCGGCGACA CCACCAACGC GATCAAGCAG
GCATCGGAAT TCGGCATCGT CCAGGGCGGC CAGAAGCTCG CCGCGCTGCT GTTGTTCGTC
AACGACGTCC ATGCGCTCGG ACTCAAGGTG GCGCAGGGCC TGACCTTCAC CGAGTCGTTC
TACTGGGATC TGAACGACAA GACTCGCGAA TGGTCCAAGC GCTTCCAGAA GCTGTCCCCC
AAGGGCACGA TGCCGTCGAT GACGGTGGCC GGTGTCTATG CCGGCACGCT GCATTACCTG
AAGACGCTGG ACGCGCTGGG CGGCAATCCG CACGACGGTG CCAAGGTCGT GGCCAAGATG
AAAGAGATCC CGACCGACGA TCCGCTGTTC GGCAAGGGCC CGCTGCGCGC CGACGGCCGC
CGCCTGATCC CGGCCTATCT GTTCGAGGTC AAGAAGCCCG AAGAGTCCAA ATATCCGTGG
GACTACTACA AGCTGATCGC GACCATCGCG CCGGAGGACG CCGCGAAGCC GCTGGAAGCC
AGCGAGTGCC CGCTGGTCAA GAAGTAA
 
Protein sequence
MTTSHARRMA ALLAATTLSF AGSAFADDKV VKIGVLNDMS SLYADIGGPN SVAAINMAVE 
DSGMKAKGWT IEVISGDHQN KPDIGVNIGR QWIDTQKVDV IMDTPNSGVA LAVSNLVKEK
NSILINSGGA SADLTGKACN ANTISYTYDT YMLANGTGKA LTKAGGDSWF FLTADYAFGH
ALERDTSAVV TANGGKVLGS VKHPLNTADF SSFLLQAQSS KAKVIGLANA GGDTTNAIKQ
ASEFGIVQGG QKLAALLLFV NDVHALGLKV AQGLTFTESF YWDLNDKTRE WSKRFQKLSP
KGTMPSMTVA GVYAGTLHYL KTLDALGGNP HDGAKVVAKM KEIPTDDPLF GKGPLRADGR
RLIPAYLFEV KKPEESKYPW DYYKLIATIA PEDAAKPLEA SECPLVKK