Gene Pden_1717 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_1717 
Symbol 
ID4580979 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp1702840 
End bp1704039 
Gene Length1200 bp 
Protein Length399 aa 
Translation table11 
GC content65% 
IMG OID639769031 
ProductABC branched-chain amino acid transporter, periplasmic binding protein 
Protein accessionYP_915510 
Protein GI119384454 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.620152 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGAAAGT TTCTGCTGTC GACCGCTGCG GTCGGCCTTA TTGCCACGCC CGCCCTGGCC 
GAAGTCTCGG ACGGCAAGGT CAAGATCGGC ATCCTGAACG ACCAGTCCGG GGTCTATGCC
GATTTCGGCG GCAAGTATTC CTATGAGGCC GCGCGGATGG CGGTCGAGGA TTTCGGCGGC
AAGGTGCTGG ACGCGCCCAT CGAGGTCGTC ACCGCCGACC ACCAGAACAA GCCCGACATC
GCCTCGAACA TCGCCCGGCA ATGGTACGAT ACCGAGCAGG TCGACACGAT CATGGAGCTG
ACCACCTCGT CGGTCGGCCT GGCCGTGCAG GCGCTGAGCC AGGAAAAGAA GAAGATCACC
GTCAACACCG GCGCGGCCAC GACCGAGCTG ACCGGAGCGC AATGCACGCC CTACGGCTTC
CACTGGGCCT ATGACACCCA TGCGCTGGCC GTGGGCACCG GCGGCGCCTT GGTGAAGGAG
GGCGGCGACA GCTGGTTCTT CCTGACTGCG GACTATGCCT TCGGCTATTC GCTGGAAGAG
CAGACCGGCA ATTTCGTCAA GTCGCAGGGC GGCACGGTCG CGGGCGCGGT GCGCCACCCG
CTGGCGACGA CGGATTATTC CTCGTTCCTG CTGCAGGCCC AGGCTTCGGG CGCCAAGGTG
ATCGGCCTGG CCAATGCCGG CATGGACACG CAGAACGCCA TCAAGCAGGC GGCTGAATTC
GGCATCACTG CCGGCGGCCA GCGCCTTGCG GCGCTGCTCT TTACCTTGGC CGAGGTGCAT
GGAATCGGGC TGGACGCCGC GCAGGGGCTG ACGCTGACCG AAAGCTTCTA CTGGAACCGC
ACGCCGGAAT CGCGCGAGTT CGGCGAACGC TTCAAGGAGC GGACGGGCGT CATGCCGAAC
ATGGTCCATG CCGGCACCTA TTCGGCCGTC ACCCAATACC TCAAGGCGAT CGAGGCCGCG
GGCACCGACG AAACCGAGGC CGTCGCCGCC AAGATGCACG AGATGCCGGT CGACGACGTC
TTTGCCCAGG GCGGCAAGGT CGGGCCGAAC GGCCGGCTGA TCAAGGACGT GTATCTGATG
GAGGTCAAGG CGCCCGGCGA CGTGACCGAG GATTGGGACT ACTACAACGT CCTGGCCACG
ATTCCGGGCG ACGAGGCGTT CCTGAACCCG GCCGAAAGCG GCTGTCCTCT GGTCCAGTGA
 
Protein sequence
MRKFLLSTAA VGLIATPALA EVSDGKVKIG ILNDQSGVYA DFGGKYSYEA ARMAVEDFGG 
KVLDAPIEVV TADHQNKPDI ASNIARQWYD TEQVDTIMEL TTSSVGLAVQ ALSQEKKKIT
VNTGAATTEL TGAQCTPYGF HWAYDTHALA VGTGGALVKE GGDSWFFLTA DYAFGYSLEE
QTGNFVKSQG GTVAGAVRHP LATTDYSSFL LQAQASGAKV IGLANAGMDT QNAIKQAAEF
GITAGGQRLA ALLFTLAEVH GIGLDAAQGL TLTESFYWNR TPESREFGER FKERTGVMPN
MVHAGTYSAV TQYLKAIEAA GTDETEAVAA KMHEMPVDDV FAQGGKVGPN GRLIKDVYLM
EVKAPGDVTE DWDYYNVLAT IPGDEAFLNP AESGCPLVQ