More than 300 homologs were found in PanDaTox collection
for query gene Pden_1717 on replicon NC_008686
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004311  BRA0953  branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative  81.58 
 
 
401 aa  660    Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009429  Rsph17025_3292  hypothetical protein  81.16 
 
 
400 aa  663    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.406168  normal 
 
 
-
 
NC_007494  RSP_3297  ABC branched-chain amino acid transporter, periplasmic binding protein  80.15 
 
 
400 aa  653    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.300791  n/a   
 
 
-
 
NC_009667  Oant_1402  branched-chain amino acid ABC transporter, periplasmic amino acid- binding protein  82.85 
 
 
401 aa  668    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2864  putative periplasmic binding ABC transporter protein  79.75 
 
 
401 aa  663    Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.581336 
 
 
-
 
NC_009504  BOV_A0894  putative branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein  81.84 
 
 
401 aa  661    Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_012858  Rleg_6729  Extracellular ligand-binding receptor  75.56 
 
 
401 aa  639    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_1717  ABC branched-chain amino acid transporter, periplasmic binding protein  100 
 
 
399 aa  818    Paracoccus denitrificans PD1222  Bacteria  normal  0.620152  normal 
 
 
-
 
NC_011366  Rleg2_5823  putative branched-chain amino acid ABC transporter, substrate-binding protein  75.56 
 
 
401 aa  637    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.281514  normal  0.102648 
 
 
-
 
NC_009050  Rsph17029_4029  ABC branched-chain amino acid transporter, periplasmic binding protein  80.15 
 
 
400 aa  655    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1790  Leu/Ile/Val-binding family protein  71.5 
 
 
417 aa  581  1.0000000000000001e-165  Methylobacterium sp. 4-46  Bacteria  normal  0.322977  normal  0.0207356 
 
 
-
 
NC_011894  Mnod_0709  Leu/Ile/Val-binding family protein  71.32 
 
 
406 aa  574  1.0000000000000001e-163  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.195015  n/a   
 
 
-
 
NC_009485  BBta_0682  putative branched chain amino acid binding protein  66.58 
 
 
395 aa  558  1e-158  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.246685  normal  0.442954 
 
 
-
 
NC_010505  Mrad2831_3789  Leu/Ile/Val-binding family protein  67.51 
 
 
409 aa  556  1e-157  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.710609 
 
 
-
 
NC_007925  RPC_0074  putative branched chain amino acid periplasmic binding protein of ABC transporter  67.01 
 
 
399 aa  544  1e-154  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4690  extracellular ligand-binding receptor  66.75 
 
 
397 aa  543  1e-153  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_4400  putative branched chain amino acid periplasmic binding protein of ABC transporter  67.19 
 
 
397 aa  542  1e-153  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_5300  putative periplasmic substrate binding protein  67.19 
 
 
397 aa  535  1e-151  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.401613  n/a   
 
 
-
 
NC_011894  Mnod_7057  Extracellular ligand-binding receptor  56.05 
 
 
420 aa  459  9.999999999999999e-129  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6250  ABC transporter substrate-binding protein  57.41 
 
 
413 aa  453  1.0000000000000001e-126  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0435582 
 
 
-
 
NC_007643  Rru_A3303  amide-urea binding protein  55.39 
 
 
404 aa  452  1.0000000000000001e-126  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.219547  n/a   
 
 
-
 
NC_010511  M446_5530  putative ABC branched-chain amino transporter, periplasmic binding protein  53.88 
 
 
401 aa  435  1e-121  Methylobacterium sp. 4-46  Bacteria  normal  0.460998  normal 
 
 
-
 
NC_011894  Mnod_5117  putative UreA/short-chain amide ABC transporter  55.33 
 
 
404 aa  435  1e-121  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_2137  ABC branched-chain amino acid transporter, periplasmic ligand biinding protein  55.79 
 
 
404 aa  432  1e-120  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6215  putative ABC branched-chain amino transporter, periplasmic binding protein  54.76 
 
 
403 aa  431  1e-120  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.947625  normal 
 
 
-
 
NC_010511  M446_3023  putative UreA/short-chain amide ABC transporter  56.79 
 
 
406 aa  434  1e-120  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.040363 
 
 
-
 
NC_011894  Mnod_3421  ABC transporter substrate-binding protein  51.89 
 
 
406 aa  434  1e-120  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009717  Xaut_5024  extracellular ligand-binding receptor  56.42 
 
 
400 aa  429  1e-119  Xanthobacter autotrophicus Py2  Bacteria  normal  0.151241  normal 
 
 
-
 
NC_009675  Anae109_1677  ABC branched-chain amino acid transporter, periplasmic ligand biinding protein  55.26 
 
 
404 aa  430  1e-119  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_1820  Extracellular ligand-binding receptor  55.79 
 
 
404 aa  430  1e-119  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_4022  extracellular ligand-binding receptor  54.75 
 
 
404 aa  431  1e-119  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.339015  normal  0.405471 
 
 
-
 
NC_011894  Mnod_3119  Extracellular ligand-binding receptor  52.63 
 
 
403 aa  423  1e-117  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.741733  n/a   
 
 
-
 
NC_007348  Reut_B3887  ureA/short-chain amide ABC transporter  52.23 
 
 
413 aa  421  1e-116  Ralstonia eutropha JMP134  Bacteria  normal  0.0891482  n/a   
 
 
-
 
NC_007958  RPD_2475  ABC-type branched-chain amino acid transport systems, periplasmic component  52.75 
 
 
405 aa  421  1e-116  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.25109 
 
 
-
 
NC_007973  Rmet_1640  putative UreA/short-chain amide ABC transporter  52.24 
 
 
412 aa  421  1e-116  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.000640664  normal 
 
 
-
 
NC_003295  RSc3342  putative substrate-binding periplasmic (PBP) ABC transporter protein  51.27 
 
 
402 aa  416  9.999999999999999e-116  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2487  Extracellular ligand-binding receptor  50.39 
 
 
404 aa  417  9.999999999999999e-116  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.589907  n/a   
 
 
-
 
NC_007778  RPB_3199  extracellular ligand-binding receptor  49.13 
 
 
405 aa  416  9.999999999999999e-116  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.206752  normal  0.636131 
 
 
-
 
NC_010511  M446_1336  extracellular ligand-binding receptor  53.28 
 
 
400 aa  415  9.999999999999999e-116  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.116449 
 
 
-
 
NC_007964  Nham_1674  ABC transporter substrate-binding protein  52.62 
 
 
409 aa  416  9.999999999999999e-116  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_4932  extracellular ligand-binding receptor  51.32 
 
 
409 aa  417  9.999999999999999e-116  Burkholderia phymatum STM815  Bacteria  normal  0.350034  normal 
 
 
-
 
NC_010682  Rpic_3537  putative substrate-binding periplasmic (PBP) ABC transporter protein  50.87 
 
 
402 aa  412  1e-114  Ralstonia pickettii 12J  Bacteria  normal  0.277166  normal  0.0827229 
 
 
-
 
NC_010505  Mrad2831_0329  putative ABC transport protein substrate-binding component  52.84 
 
 
405 aa  414  1e-114  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.42175  normal 
 
 
-
 
NC_007958  RPD_2256  extracellular ligand-binding receptor  51.47 
 
 
403 aa  414  1e-114  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.777349  normal  0.277076 
 
 
-
 
NC_007973  Rmet_3518  extracellular ligand-binding receptor  50.62 
 
 
402 aa  411  1e-114  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.36456 
 
 
-
 
NC_010524  Lcho_3593  putative ABC transporter substrate binding protein  52.24 
 
 
403 aa  411  1e-113  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.636574 
 
 
-
 
NC_009485  BBta_6351  putative branched-chain amino acid ABC transporter, substrate-binding protein  51.84 
 
 
403 aa  410  1e-113  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.182816 
 
 
-
 
NC_009485  BBta_3757  ABC transporter substrate-binding protein  52 
 
 
409 aa  409  1e-113  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_4450  Extracellular ligand-binding receptor  56.95 
 
 
401 aa  410  1e-113  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.378958  n/a   
 
 
-
 
NC_012856  Rpic12D_3211  Extracellular ligand-binding receptor  50.37 
 
 
402 aa  410  1e-113  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2970  branched chain amino acid ABC transporter periplasmic ligand-binding protein  54.18 
 
 
399 aa  408  1e-113  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0085  branched chain amino acid ABC transporter periplasmic ligand-binding protein  54.18 
 
 
399 aa  408  1e-113  Burkholderia cenocepacia HI2424  Bacteria  normal  0.782241  n/a   
 
 
-
 
NC_009720  Xaut_1437  extracellular ligand-binding receptor  53.27 
 
 
401 aa  410  1e-113  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.694305 
 
 
-
 
NC_010551  BamMC406_0087  extracellular ligand-binding receptor  54.18 
 
 
399 aa  409  1e-113  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0356646  normal 
 
 
-
 
NC_010508  Bcenmc03_0103  branched chain amino acid ABC transporter periplasmic ligand-binding protein  53.91 
 
 
399 aa  406  1.0000000000000001e-112  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.32797  normal 
 
 
-
 
NC_009074  BURPS668_3991  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  53.1 
 
 
398 aa  406  1.0000000000000001e-112  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_3891  extracellular ligand-binding receptor  52.65 
 
 
406 aa  407  1.0000000000000001e-112  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA2936  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  53.1 
 
 
398 aa  405  1.0000000000000001e-112  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007336  Reut_C6432  extracellular ligand-binding receptor  53.81 
 
 
407 aa  405  1.0000000000000001e-112  Ralstonia eutropha JMP134  Bacteria  hitchhiker  0.00470186  n/a   
 
 
-
 
NC_007434  BURPS1710b_0198  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  53.1 
 
 
398 aa  406  1.0000000000000001e-112  Burkholderia pseudomallei 1710b  Bacteria  normal  0.352006  n/a   
 
 
-
 
NC_007510  Bcep18194_A3267  branched chain amino acid ABC transporter periplasmic ligand-binding protein  53.91 
 
 
399 aa  407  1.0000000000000001e-112  Burkholderia sp. 383  Bacteria  normal  normal  0.275506 
 
 
-
 
NC_007651  BTH_I3329  branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein  53.1 
 
 
398 aa  405  1.0000000000000001e-112  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3279  Extracellular ligand-binding receptor  53.21 
 
 
400 aa  408  1.0000000000000001e-112  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.463071  n/a   
 
 
-
 
NC_011892  Mnod_8470  ABC-type branched-chain amino acid transport systems, periplasmic component  48.74 
 
 
411 aa  406  1.0000000000000001e-112  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.481667  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3375  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  53.1 
 
 
398 aa  405  1.0000000000000001e-112  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_4065  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  53.1 
 
 
398 aa  406  1.0000000000000001e-112  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0085  branched chain amino acid ABC transporter periplasmic ligand-binding protein  53.37 
 
 
399 aa  407  1.0000000000000001e-112  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.56224  normal 
 
 
-
 
NC_009720  Xaut_4079  ABC-type branched-chain amino acid transport system, periplasmic component  50.26 
 
 
405 aa  407  1.0000000000000001e-112  Xanthobacter autotrophicus Py2  Bacteria  normal  0.23084  normal 
 
 
-
 
NC_009485  BBta_5091  putative branched-chain amino acid ABC transporter, substrate-binding protein  50.67 
 
 
416 aa  407  1.0000000000000001e-112  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.339692  normal  0.603773 
 
 
-
 
NC_008390  Bamb_0076  extracellular ligand-binding receptor  54.18 
 
 
399 aa  408  1.0000000000000001e-112  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A3369  extracellular ligand-binding receptor  49.13 
 
 
402 aa  402  1e-111  Ralstonia eutropha JMP134  Bacteria  normal  0.998438  n/a   
 
 
-
 
NC_007925  RPC_2953  ABC transporter substrate-binding protein  54.5 
 
 
408 aa  404  1e-111  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.137688  normal 
 
 
-
 
NC_011662  Tmz1t_1377  ABC transporter substrate-binding protein  49 
 
 
404 aa  402  1e-111  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1607  putative amino acid uptake ABC transporter, periplasmic amino acid-binding protein  51.64 
 
 
392 aa  404  1e-111  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007336  Reut_C5957  extracellular ligand-binding receptor  47.73 
 
 
409 aa  401  9.999999999999999e-111  Ralstonia eutropha JMP134  Bacteria  normal  0.0908104  n/a   
 
 
-
 
NC_011894  Mnod_1194  putative ABC branched-chain amino transporter, periplasmic binding protein  52.12 
 
 
405 aa  401  9.999999999999999e-111  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A0019  branched chain amino acid ABC transporter periplasmic ligand-binding protein  49.87 
 
 
404 aa  400  9.999999999999999e-111  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2466  Extracellular ligand-binding receptor  50.37 
 
 
400 aa  401  9.999999999999999e-111  Acidovorax ebreus TPSY  Bacteria  normal  0.469696  n/a   
 
 
-
 
NC_010505  Mrad2831_0057  extracellular ligand-binding receptor  51.62 
 
 
405 aa  400  9.999999999999999e-111  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.652717  normal 
 
 
-
 
NC_009720  Xaut_1298  putative ABC branched-chain amino transporter, periplasmic binding protein  50.79 
 
 
419 aa  399  9.999999999999999e-111  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_5073  putative substrate-binding protein  50.12 
 
 
410 aa  398  9.999999999999999e-111  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.210468 
 
 
-
 
NC_008782  Ajs_3120  putative substrate-binding periplasmic (pbp) ABC transporter protein  50.37 
 
 
400 aa  400  9.999999999999999e-111  Acidovorax sp. JS42  Bacteria  normal  0.347887  normal 
 
 
-
 
NC_010505  Mrad2831_1936  extracellular ligand-binding receptor  52.94 
 
 
409 aa  397  1e-109  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0141282 
 
 
-
 
NC_010511  M446_3244  extracellular ligand-binding receptor  55.61 
 
 
401 aa  395  1e-109  Methylobacterium sp. 4-46  Bacteria  normal  0.114685  normal  0.545433 
 
 
-
 
NC_009485  BBta_4670  putative ABC transporter, substrate-binding protein  47.26 
 
 
403 aa  397  1e-109  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3913  Extracellular ligand-binding receptor  49.62 
 
 
404 aa  397  1e-109  Burkholderia phytofirmans PsJN  Bacteria  normal  0.956199  normal 
 
 
-
 
NC_007958  RPD_1254  ABC-type branched-chain amino acid transport systems, periplasmic component  50.53 
 
 
427 aa  397  1e-109  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.946675 
 
 
-
 
NC_011992  Dtpsy_3122  Extracellular ligand-binding receptor  50 
 
 
419 aa  394  1e-108  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1152  UreA/short-chain amide ABC transporter  49.21 
 
 
415 aa  394  1e-108  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.471291  normal  0.323569 
 
 
-
 
NC_009720  Xaut_3229  putative ABC branched-chain amino transporter, periplasmic binding protein  53.38 
 
 
412 aa  392  1e-108  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A3756  putative substrate-binding periplasmic (pbp) ABC transporter protein  49.22 
 
 
407 aa  393  1e-108  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.260098 
 
 
-
 
NC_011004  Rpal_0486  substrate-binding protein  51.21 
 
 
401 aa  394  1e-108  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1473  putative urea/short-chain binding protein of ABC transporter  49.74 
 
 
406 aa  392  1e-108  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.267716  normal 
 
 
-
 
NC_008752  Aave_1283  putative substrate-binding periplasmic (pbp) ABC transporter protein  51.34 
 
 
401 aa  393  1e-108  Acidovorax citrulli AAC00-1  Bacteria  normal  0.154147  normal 
 
 
-
 
NC_009720  Xaut_1578  ABC transporter substrate-binding protein  51.79 
 
 
402 aa  390  1e-107  Xanthobacter autotrophicus Py2  Bacteria  normal  0.803505  normal 
 
 
-
 
NC_007778  RPB_3877  urea/short-chain binding protein of ABC transporter  48.98 
 
 
406 aa  388  1e-107  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.188449  normal 
 
 
-
 
NC_009485  BBta_3779  putative ABC transporter, substrate binding protein  52.89 
 
 
408 aa  390  1e-107  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_3047  extracellular ligand-binding receptor  49.47 
 
 
404 aa  390  1e-107  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_2999  putative urea/short-chain binding protein of ABC transporter  51.55 
 
 
408 aa  388  1e-107  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0873398  normal  0.403324 
 
 
-
 
NC_008752  Aave_1282  extracellular ligand-binding receptor  50 
 
 
406 aa  389  1e-107  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0780459  normal  0.651455 
 
 
-
 
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