Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_2953 |
Symbol | |
ID | 3969952 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 3230493 |
End bp | 3231719 |
Gene Length | 1227 bp |
Protein Length | 408 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637926064 |
Product | ABC transporter substrate-binding protein |
Protein accession | YP_532817 |
Protein GI | 90424447 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.137688 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAACA AGAGTTCCGC GCTTCTGCTC GGCACCGCAT TTGTACTTGC CACCGCTGCT CTTGCGTCCG CCCAGAGCAC GGACAAGACG GTCAAGATCG GCTCGCTCAG CGACCAGTCC GGCCTTTATG CGGACGTCGG CGGTCCCGGT TCGACGCTGG CTGCCCAGAT GGCGGTGGAA GACTCCGGCC TGACGGCCAA AGGCTGGAAG ATCGATGTGA TCTCCGGCGA TCACCAGAAC AAGCCCGACA TCGGCTCGAA CATCGCGCGG CAGTGGTTCG ATGTGGACAA GGTCGATGTC GTGGTCGATA CGCCGAACTC CGGCGTTGCG CTGGCGGTCA GCAACATCAT CAAGGAAAAG AACGGGGTTT TCCTCAATTC GGGCGCCGGC AGCTCGGATC TGACCAACGC GCAATGCTCG CCCAATACGA TTCACTGGAC CTACGACACC TACATGCTGG CGCACGGCAC CGGCTCCGCC TTGACCAAGG CCGGCGGCGA CAGCTGGTTT TTCCTGACCG CCGACTACGC GTTCGGCGCG GCGCTGGAGC GTGACACCAC GGCCGCCGTC AACGCGGGGG GCGGCAAGGT GCTCGGTGGC GTGAAGCACC CGCTCAACAC CTCCGACTTC TCGTCCTTCC TGCTGCAGGC GCAGGCCTCC AAGGCCAAGG TGATCGGTCT CGCCAATGCC GGCGGCGACA CTTCCAACGC CATCAAGCAG GCGGCGGAAT TCGGCATCAT CGCCGGCGGC CAGAAGCTCG CCGGGCTCCT GATGTTCATC ACCGACGTTC ACGCCATAGG CTTGCCGGTG GCCCAGGGTC TGAACTTCAC CGAGACGTTC TACTGGGACG CCAACGAGCA GACGAGGGCG TTTTCGAAGC GGTTCCAGGA CCGGATGCGC AACAAGCAGG TGCCGACCAT GTCGCAGGCC GGCGTGTATT CGGCGCTGAC CCACTACTTC AAGACGCTCG ATGCGATGGG CGGCAATTCG CATGACGGCG CCAAGATCGT CGCCAAGATG AAGGAAATGC CGACCGACGA TCCGTTGTTC GGCAAGGGCT CGATCCAGCC CAACGGCCGC AAGATCCACC CGGCCTACCT GTTCGAAGTG AAGAAGCCCG CGGAATCCAA GGGACCGTGG GACTATTACA AGCTGGTCGC CACCATTCCG GCGGAAGAAG CCTTCACGCC GCTCGCCAAG AGCACGTGCC CGCTGTTGAA GAAGTGA
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Protein sequence | MKNKSSALLL GTAFVLATAA LASAQSTDKT VKIGSLSDQS GLYADVGGPG STLAAQMAVE DSGLTAKGWK IDVISGDHQN KPDIGSNIAR QWFDVDKVDV VVDTPNSGVA LAVSNIIKEK NGVFLNSGAG SSDLTNAQCS PNTIHWTYDT YMLAHGTGSA LTKAGGDSWF FLTADYAFGA ALERDTTAAV NAGGGKVLGG VKHPLNTSDF SSFLLQAQAS KAKVIGLANA GGDTSNAIKQ AAEFGIIAGG QKLAGLLMFI TDVHAIGLPV AQGLNFTETF YWDANEQTRA FSKRFQDRMR NKQVPTMSQA GVYSALTHYF KTLDAMGGNS HDGAKIVAKM KEMPTDDPLF GKGSIQPNGR KIHPAYLFEV KKPAESKGPW DYYKLVATIP AEEAFTPLAK STCPLLKK
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