| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1473 |
|---|
| Symbol | |
|---|
| ID | 4021952 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 1641660 |
|---|
| End bp | 1642880 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637961667 |
|---|
| Product | putative urea/short-chain binding protein of ABC transporter |
|---|
| Protein accession | YP_568611 |
|---|
| Protein GI | 91975952 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.267716 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGCCA AGCCTCTCGC GGCGGCGATG ATGACGGCTG CGCTTATGTC ATCCTCGACC
GCATTCGCCC AGGTATCCGA CGACATTGTC AAGATCGGTG TACTGACCGA TATGAACGGT
CCCGCGTCGA CGCCGACCGG CCAGGGTTCG ATGACGGCCG CGCAAATGGC GATCGACGAT
TTCGGCGGCC AGGTGCTGGG CAAGCCGATC AGCGTCATCG TCGGCGACCA CCAGCTCAAG
CCCGACATCG GCGGCGCTCT GGCGCGGCGC TGGTACGACG TCGAACAGGT CGACCTGATC
GTCGACGTGC CGGTCTCCGC GGTCGGTCTC GCGGTTCAGA ACATCGCCAA CGAAAAGAAG
CGGATGTTCA TCACGCAATC GACCGGCGCC GCCGATTTTC ACGGCAAGTT CTGCAGCCCC
TACACGATGC AATGGGTGTT CGACACCCGG GCGCTGGCGG TCGGCACCGC GCAGGAGGTC
GTGAAACGCG GCGGCGACAC CTGGTTCTTC ATCACCGACG ACTACGCCTT CGGCCTGTCG
CTGGAGCGCG ACGCCGCGGC GGTGGTGACC AAGGCCGGCG GCAAGGTGAT CGGCTCGGTG
CGTCCGCCGT TCGCGACGCC GGACCTGTCG TCCTTCGTAC TTCAGGCGCA AGCCTCGAAG
GCCAAGATCA TCGGCATCGC CGGCGGCCCG CCGAACAACA TCAATGAAAT AAAGACCGGC
GCCGAGTTCG GCGTCTTCAA GGGCGGACAA CAGATGGCGG CGCTGCTGGC GTTGATCACC
GACATCCATT CGCTCGGCCT GCCCGCCGCG CAGGGCCTGT TACTGACGAC GTCGTTCTAT
TGGGACATGG ACGACAGGAC CCGCGAATGG TCGAAGCGCT ACTTCGCCAA GATGAACCGG
ATGCCGACGA TGTGGCAGGC CGGCGTGTAT TCCGCGGTGA CACACTATCT GCAAGGCATC
AAGGAGGCCG GCACCGACGA GCCGCTCAAG GTCGCCGCCA AGATGCGCGA GAAGCCGATC
GAGGATTTCT TCTCGCGCAA TGGCAAACTG CGCGAGGACG GTCTGATGGT GCATGACTTG
ATGCTGGTTC AGGTCAAGAG CCCGGAGGAG TCGAAATATC CGTGGGACTA TTACAAGATC
CTCGCGCATA TCTCCGGTGA AGAAGCGTTC GGCCCGCCCG ACCCGGCCTG CCCGTTGATC
AAGAAACAGG CGGCGAATTG A
|
|---|
| Protein sequence | MFAKPLAAAM MTAALMSSST AFAQVSDDIV KIGVLTDMNG PASTPTGQGS MTAAQMAIDD
FGGQVLGKPI SVIVGDHQLK PDIGGALARR WYDVEQVDLI VDVPVSAVGL AVQNIANEKK
RMFITQSTGA ADFHGKFCSP YTMQWVFDTR ALAVGTAQEV VKRGGDTWFF ITDDYAFGLS
LERDAAAVVT KAGGKVIGSV RPPFATPDLS SFVLQAQASK AKIIGIAGGP PNNINEIKTG
AEFGVFKGGQ QMAALLALIT DIHSLGLPAA QGLLLTTSFY WDMDDRTREW SKRYFAKMNR
MPTMWQAGVY SAVTHYLQGI KEAGTDEPLK VAAKMREKPI EDFFSRNGKL REDGLMVHDL
MLVQVKSPEE SKYPWDYYKI LAHISGEEAF GPPDPACPLI KKQAAN
|
|---|
| |